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B-dependent expression of the antiapoptotic factor c-FLIP is regulated by calpain 3, the protein involved in limb-girdle muscular dystrophy type 2A



* Généthon CNRS FRE 3018, Evry, France;
Université Montpellier 2, CNRS UMR 5554, Montpellier, France;
The Research Group on Lymphoma, INSERM, EMI 353, Albert Bonniot Institute, La Tronche, France;
IGF, UMR 5203, Département de Neuroscience, Montpellier, France;
|| Friedrich-Baur-Institute and Department of Neurology, Ludwig-Maximilians-University, Munich, Germany; and
¶ Laboratoire dImmunologie Moléculaire, Institut de Génétique Humaine, CNRS UPR 1142, and Université Montpellier 2, Montpellier, France
2Correspondence: Généthon CNRS FRE3018, 1, rue de linternationale, 91000 Evry, France. Email: richard{at}genethon.fr
| ABSTRACT |
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B/I
B
survival pathway. In this study, the consequences of altered NF-
B/I
B
pathway were investigated using biological materials from LGMD2A patients. We first show that the antiapoptotic factor cellular-FLICE inhibitory protein (c-FLIP), which is dependent on the NF-
B pathway in normal muscle cells, is down-regulated in LGMD2A biopsies. In muscle cells isolated from LGMD2A patients, NF-
B is readily activated on cytokine induction as shown by an increase in its DNA binding activity. However, we observed discrepant transcriptional responses depending on the NF-
B target genes. I
B
is expressed following NF-
B activation independent of the CAPN3 status, whereas expression of c-FLIP is obtained only when CAPN3 is present. These data lead us to postulate that CAPN3 intervenes in the regulation of the expression of NF-
B-dependent survival genes to prevent apoptosis in skeletal muscle. Deregulations in the NF-
B pathway could be part of the mechanism responsible for the muscle wasting resulting from CAPN3 deficiency.—Benayoun, B., Baghdiguian, S., Lajmanovich, A., Bartoli, M., Daniele, N., Gicquel, E., Bourg, N., Raynaud, F., Pasquier, M.-A., Suel, L., Lochmuller, H., Lefranc, G., Richard, I. NF-
B-dependent expression of the antiapoptotic factor c-FLIP is regulated by calpain 3, the protein involved in limb-girdle muscular dystrophy type 2A.
Key Words: muscle apoptosis FLICE inhibitory protein lgmd2A
| INTRODUCTION |
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B p65 transcription factor and nuclear accumulation of its inhibitor I
B
(4)
NF-
B is a transcription factor family involved in the inflammatory response and in cell survival (6
, 7)
. In resting cells, NF-
B is generally found in the cytoplasm, associated with its inhibitor, I
B
. On stimulation, activation of the I
B
kinase complex (IKK) leads to phosphorylation of the I
B
molecules. Subsequent ubiquitination and degradation of this inhibitor by the proteasome liberates NF-
B, which migrates into the nucleus and binds to target gene promoters. The transcriptional activity of NF-
B p65 is controlled by post-translational modifications (8)
and requires recruitment of cofactors or chromatin remodeling for promoter accessibility to ensure proper expression of NF-
B-dependent genes (9)
.
In skeletal muscle, molecular mechanisms governing the activation of the NF-
B pathway and its downstream targets have not been fully elucidated. Activation of this signaling pathway was demonstrated to occur in this tissue through tumor necrosis factor (TNF)-
stimulation, oxidative and mechanical stresses, unloading, or exercise (10
11
12)
. The best documented role of NF-
B is as a potent mediator of muscle atrophy. Indeed, muscle fibers of mice engineered for inactivation of the NF-
B pathway are resistant to atrophic signals classically induced by muscle unloading and denervation (13
14
15)
. In addition, mice transgenic for a muscle-specific activated form of IKKβ leading to constitutive activation of the NF-
B target genes exhibit significant muscle wasting (16)
. However, only a few NF-
B target genes have been identified to date in the skeletal muscle, including the proatrophic interleukin (IL)-6 and the ubiquitin ligase Muscle RING Finger 1 (16
, 17)
.
Following our previous observations of the perturbation of the NF-
B pathway in LGMD2A, we took advantage of CAPN3-deficient biopsy material to gain further insight into the regulation of this pathway in mature muscles. The present study reports that loss of CAPN3 function is associated with a down-regulation of the antiapoptotic factor, cellular-FLICE inhibitory protein (c-FLIP), in LGMD2A biopsies. We also show that c-FLIP expression is dependent on the NF-
B pathway in muscle cells and that TNF-
and IL1-β induce the activation of NF-
B even in the absence of calpain 3. However, we observed different transcriptional responses depending on the target promoter: I
B
but not c-FLIP expression is induced in CAPN3-deficient cells. These observations pinpoint CAPN3 as a potent regulator of the NF-
B cell survival pathway in skeletal muscle.
| MATERIALS AND METHODS |
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Normal human skeletal muscle cells (SkMC) were purchased from Cambrex Corp., (East Rutherford, NJ, USA). Human myoblast control cells (A33) and LGMD2A cells (A35, A36) were obtained from the Muscle Tissue Culture Collection (MTCC) at the Friedrich-Baur-Institute (Department of Neurology, Ludwig-Maximilians-University, Munich, Germany). The patients from whom the LGMD2A cells originated are both compound heterozygotes for mutations in the CAPN3. A35 carries: 1) a deletion of a nucleotide in exon 4 (550delA), resulting in frameshift and creation of a premature stop codon, and 2) a 1063C-to-T transition, resulting in an Arg355-to-Trp (R355W) substitution. A36 carries the same deletion (550delA) and a 2288A-to-G transition, resulting in a Tyr763-to-Cys (Y763C) substitution.
All cell lines were maintained in SkMC growth medium (Promocell, Heidelberg, Germany) until confluence was reached. Medium then was replaced by SkMC differentiation medium (Promocell) and changed every 2–3 days. After 14 days (SkMC cells) or 7 days (A33, A35, and A36 cells) in differentiation medium, when extensive syncytium development could be observed, cells were treated for 150 min with TNF-
or IL-1β, at a final concentration of 10 ng/ml, before mRNA or protein extraction.
Luciferase reporter assay of c-FLIP promoter activity
Myogenic C2 cells were seeded in 6-well plates and transfected with 1 µg of a pGL3-FLIP promoter luciferase reporter plasmid with an escalating dose of pSORT6-hNF-
B (0–5 µg), using 40 µl FuGENE 6, according to the manufacturers protocol (Roche, Neuilly sur Seine, France). In all experiments, a variable quantity of pcDNA3.1D/V5-His/LacZ plasmid was added to keep the amount of transfected DNA at 6 µg. The pGL3- FLIP plasmid carries the sequence corresponding to positions –1179 to –281 relative to the proposed transcriptional start site of FLIP (kindly provided as a gift by Dr. Wafik S. El-Deiry, University of Pennsylvania, Philadelphia, PA, USA) (18)
. Twenty-four hours after transfection, cells were collected and luciferase activity was measured using the Luciferase assay system (Promega Corp., Madison, WI, USA) on a Victor multilabel reader (Wallac, Neuilly sur Seine, France). Results shown are triplicates from 4 separate experiments.
Measurement of caspase-3 activity
The caspase-3 protease activity of myogenic cells was evaluated using the PhiPhiLux G2D2 kit, according to the manufacturers instructions (Onco Immunin, Inc., Gaithersburg, MD, USA). Briefly, 1 x 105 cells at the myoblast stage were incubated with 50 µl of a 10 µM G2D2 substrate solution supplemented with 10% fetal calf serum for 1 h at 37°C. Cells were washed once in ice-cold PBS and resuspended in 500 µl of PBS, and caspase-3 activity was analyzed by fluorescence-activated cell-sorting flow cytometry.
Western blotting
Muscle biopsies were solubilized in lysis buffer (1% Triton X-100, 20 mM Tris-HCl pH 8, 137 mM NaCl, 10 mM EDTA, 10% glycerol) in the presence of protease inhibitors (1 mM PMSF, 100 µM iodoacetamide, 10 µM leupeptin) for 30 min at 4°C. Cell debris were removed by centrifugation at 10,000 g for 30 min at 4°C. For each sample, a volume of 30 µl was loaded onto an 8% SDS-polyacrylamide gel, and normalization of protein amounts was carried out following immunoblotting. After electrophoresis, proteins were transferred to a polyvinylidene difluoride membrane (Millipore, St. Quentin-Yvelines, France) by electroblotting.
Total cell lysates were prepared using the TransAM extraction buffer (Active Motif, Rixensart, Belgium). The nuclear and cytosolic proteins were extracted with the NucBuster protein extraction kit (Novagen, Madison, WI, USA), according to the manufacturers instructions. Protein concentration was determined by the Amido Schwarz methodology (19)
. Proteins (25 µg) were resolved on a precast 4–12% NuPAGE® Novex Bis-Tris Gel with MOPS SDS running buffer (Invitrogen, Carlsbad, CA, USA) and were transferred to nitrocellulose membranes by electroblotting.
After blocking nonspecific binding sites overnight with nonfat milk, the membranes were incubated at room temperature with primary antibodies: anti-I-FLICE monoclonal antibody (Dave-2; Alexis Biochemicals, Lüufelingen, Switzerland) or anti-skeletal fast myosin heavy-chain IIA monoclonal antibody (MHCIIA; A4.74; Alexis Biochemicals). Antibody labeling was revealed using HRP-conjugated goat anti-rat or rabbit anti-mouse secondary antibodies (Dako, Rixensart, Belgium) and was visualized using chemiluminescence (Amersham Life Science or Super Signal West Pico chemiluminescent kit, Pierce). For semiquantitative analysis of the immunoblots, subsaturated autoradiograms were scanned, and the signals were analyzed by densitometry using ImageJ (http://rsb.info.nih.gov/ij/). Statistically significant comparisons were treated by a Students t test.
Indirect immunofluorescence confocal microscopy
Immunofluorescence was performed as described previously (20)
. For c-FLIP analysis, the polyclonal anti-FLIP antibody AL129 (21)
was used at a concentration of 25 µg per ml in TBS 0.2% gelatin. Mouse monoclonal antibody directed against dystrophin was used as recommended (22)
. Affinity-purified secondary antibodies conjugated to either fluorescein or rhodamine were obtained from Jackson ImmunoResearch Laboratory (West Grove, PA, USA). Detection of apoptosis was performed using the TUNEL method (Boehringer, Mannheim, Germany), and the number of apoptotic myonuclei used for correlation was previously published (4)
. The slides were viewed using a Leica TCS 4D laser confocal microscope (Leica, Mannheim, Germany).
RNA extraction and real-time quantitative RT-PCR
Total RNA from cells and muscle tissue was isolated using Trizol Reagent (Life Technologies, Inc., Mannheim, Germany) according to the manufacturers instructions. cDNA was synthesized from 1 µg of total RNA using the SuperScript first-strand synthesis system for the RT-PCR kit (Invitrogen) and random oligonucleotides. Expression of the CAPN3 and c-FLIP gene was monitored by a real-time quantitative RT-PCR method using TaqMan probes (PerkinElmer, Wellesley, MA, USA). The ubiquitous acidic ribosomal phosphoprotein (PO) was used to normalize the data across samples. PO expression was monitored by SYBRGreen incorporation. The primer pairs and Taqman probe used for CAPN3 amplification were: h269F: 5'GCCAGAAGTTCCCCATCCA3', h333R: 5'TTCTGGTTGGCTCCATCAATGATA3', and h307P: 5'CCGGAAAATTTGCGAGAATCCCCG3'. The primer pairs and Taqman probe used for c-FLIP amplification were: h1363F: 5'AGCTTTGTGTGTGTCCTGGTGA3', h1435R: 5'GCCCTGAGTGAGTCTGATCCA3', and h1387P: 5'CGAGGAGGCTCCCAGAGTGTGTATGG3. The primer pairs and Taqman probe used for I
B
amplification were 1171hIkB.F: 5'GCACACTGCCTAGCCCAAA3', 1249hIkB.R: 5'CCTACAAAAAGTTCACAAAAGCAACA3', and 1191hIkB.P5'CGTCTTATTTTGTGGTAGGATCAGCCCTCA3'. The primers pairs used for PO amplification were: h95F: 5'GGCGACCTGGAAGTCCAACT3' and h243R: 5'CCATCAGCACCACAGCCTTC3'. Each experiment was performed in duplicate and repeated at least twice.
NF-
B activity assay
Transcription factor NF-
B activation was detected and quantified using an ELISA-based method, the TransAM NF-
B p65 kit, according to the manufacturers instructions. Briefly, the activated NF-
B, present in nuclear fraction extracted with the NucBuster protein extraction kit (Novagen), specifically binds to oligonucleotides corresponding to NF-
B consensus binding sites and immobilized in a 96-well plate. Bound NF-
B is detected with an anti-p65 antibody. Addition of a secondary HRP-conjugated antibody provides sensitive colorimetric readout quantified by spectrophotometry at 450 nm.
| RESULTS |
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B
/NF-
B pathway and nuclear exclusion of NF-
B (4)
B in nonmuscle cells (23
B-dependent genes that regulates apoptosis (Fig. 1
B antiapoptotic effect, c-FLIP was shown to participate in the resistance to apoptosis of the skeletal muscle cells (26)
|
The down-regulation of c-FLIP at the protein level was confirmed by immunostaining (Fig. 2
A). In control deltoid muscle sections (A30, A31), c-FLIP labeling appears to have a cytoplasmic localization with some variation in intensity between myofibers. In contrast, in LGMD2A muscles, the staining intensity is decreased, indicating a weak expression of c-FLIP. However, as dots can still be seen, the subcellular localization of c-FLIP does not seem affected.
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Finally, we measured the RNA level of c-FLIP by real time quantitative reverse transcriptase-polymerase chain reaction (RT-PCR; Fig. 2B
). c-FLIP exists as both long (c-FLIPL) and short (c-FLIPS) isoforms (25)
. The Taqman probe and oligonucleotides used detect transcripts of both isoforms, hence RT-PCR results represent a global profile of c-FLIP expression. The data obtained show that c-FLIP mRNA was 2- to 4-fold less abundant in LGMD2A than in control muscles (Fig. 2B
). It should be noted that we performed the same experiment in affected muscle samples from CAPN3-deficient mouse model and observed a 25% down-regulation. Altogether, these data show that CAPN3 deficiency is correlated with a down-regulation of the antiapoptotic factor c-FLIP originating from a reduction of mRNA transcripts.
The NF-
B pathway is activated by TNF-
and IL-1β and controls c-FLIP expression in normal skeletal muscle cells
Considering the simultaneousness of NF-
B and c-FLIP anomalies in LGMD2A, we investigated whether c-FLIP expression is under the control of NF-
B in skeletal muscle. Several known activators of the NF-
B pathway, such as members of the cytokine family (TNF-
, IL-1β, IL-6, and IL-18), oxidative stress (H2O2), or growth factors (IGF1), were tested for induction of NF-
B activity in differentiated primary skeletal muscle cell culture. They were added to the culture medium, and NF-
B DNA binding activity was measured in protein extracts using an ELISA-based method. Among the cytokines and factors tested, only TNF-
and IL-1β, the main cytokines regulating muscle protein degradation in wasting syndromes, were able to drive NF-
B activation in myotubes under our conditions. The results presented in Fig. 3
A illustrate the DNA binding activation of p65 NF-
B transcription factor on treatment with these cytokines (Fig. 3A
).
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Next, we measured c-FLIP expression after activation of the NF-
B pathway with TNF-
and IL-1β in human differentiated primary muscle culture cells. We showed that NF-
B activation was correlated with an up-regulation of c-FLIP expression at the messenger and protein level as revealed by real time quantitative RT-PCR and Western blot experiments (Fig. 3B
). To confirm that c-FLIP expression is under the control of NF-
B, we treated cells with a salicylate derivate, sulfasalazine. This drug was previously shown to inhibit the phosphorylation and degradation of I
B
, preventing the nuclear translocation of NF-
B (27)
. Incubation with sulfasalazine results in a reduction of the NF-
B activity of
84%, as shown by TransAM analysis and a decrease of c-FLIP mRNA and protein levels (Fig. 3C
).
Finally, a reporter plasmid carrying the luciferase gene under the control of the c-FLIP promoter was cotransfected with a plasmid coding for NF-
B into myogenic C2 cells. The relative luciferase activity increased in a dose-dependent manner (Fig. 3D
).
All these data suggest that expression of the antiapoptotic factor c-FLIP is NF-
B-dependent in myogenic cells.
Deficiency of CAPN3 prevents the NF-
B-dependent induction of c-FLIP expression
We examined the consequence of CAPN3 deficiency on the NF-
B cascade from receptor activation to transcription of target genes. For this purpose, we used muscles cells isolated from LGMD2A patients (Fig. 4
A). Of note, these CAPN3-deficient cells show a number of vacuoles and a significantly higher caspase-3 activity than muscle cells isolated from a healthy donor (Fig. 4A, B
), indicative of an increase of apoptosis. This observation correlates perfectly with the phenotypic alterations observed in LGMD2A muscles (4)
. These cells were treated with TNF-
and IL-1β, and NF-
B activation was measured. We observed that TNF-
or IL-1β induce NF-
B DNA binding activity in CAPN3-deficient cells, reaching levels even higher than in control cells (Fig. 5
A). This activation is associated with a high increase in mRNA level of I
B
, a NF-
B responsive gene (Fig. 5B
). However, stimulation with TNF-
or IL-1β did not lead to an increase in c-FLIP messengers and protein in LGMD2A cells whereas it did in controls (Fig. 5C, D
).
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| DISCUSSION |
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B survival pathway (4
B responsive antiapoptotic proteins, c-FLIP, BclII, and Bcl-XL are down-regulated in LGMD2A biopsies. The down-regulation of 3 NF-
B-responsive proteins is another argument in agreement with the perturbation of the NF-
B pathway in LGMD2A. Among these 3 factors, we were particularly interested by c-FLIP, considering that this factor was reported to participate in the resistance to apoptosis of skeletal muscle (26)
Using a myogenic cell culture system, we further showed that expression of c-FLIP is under the control of NF-
B. It should be noted that we observed a variability of c-FLIP expression between fibers, a heterogeneity that was previously reported (26)
. This piece of information must be viewed in light of the greater NF-
B activation in slow- compared with fast-type muscle (29)
. The subcellular localization of c-FLIP in the muscle cells appears to be cytoplasmic, as it is in other cell types (30
, 31)
. This localization corresponds to its supposed role as inhibitor of caspase 8 (32)
. Finally, we observed that, in the absence of CAPN3, NF-
B activation by TNF-
or IL-1β is maintained, and subsequent I
B
transcription is normally achieved. However, up-regulation of c-FLIP mRNA seems to be abolished. The variability that we observed in this phenomenon may be related to either apoptosis itself or a variation in terminal differentiation, as it was reported that CAPN3-deficient cells present a delayed myofibrillogenesis (33)
. To conclude, it appears that NF-
B would be able to participate in muscle cell survival through induction of antiapoptotic factors.
Importantly, the discrepancy between NF-
B-dependent expression of I
B
vs. c-FLIP suggests that only a subset of NF-
B dependent genes is sensible to the deficiency in CAPN3. Three mechanisms can be proposed to describe how the NF-
B pathway can be perturbed in the absence of CAPN3: 1) stabilization of c-FLIP mRNA, 2) regulation of NF-
B nuclear shuttling, and 3) modification of NF-
B interactions with cofactors resulting in increased transcription of c-FLIP.
1) The stability of a given mRNA transcript is often determined by the presence of specific cis-acting elements such as AU-rich regions in the 3'UTR, which are binding sites for trans-acting RNA-binding proteins to inhibit or enhance mRNA decay (34)
. Examination of c-FLIP mRNA shows, however, that it does not carry this type of sequence. In addition, in recent years, numerous studies on noncoding RNA have highlighted their importance in regulating the fate of transcribed RNA molecules, adding another level of complexity in the control of gene expression (35
, 36)
. Whether and how CAPN3 could intervene in these regulations remain to be investigated.
2) The first event in NF-
B activation is its translocation from the cytoplasm to the nucleus on phosphorylation and degradation of its inhibitor I
B
. Our results show that NF-
B is able to shuttle correctly in the nucleus in the absence of CAPN3, revealed by the increased DNA-binding activity present in this compartment in LGMD2A cells. This result is an important new insight on the pathological mechanism that extends our previous observations. In LGMD2A muscle fibers, NF-
B was found to be excluded from a subset of nuclei, thus raising the hypothesis that the CAPN3 deficiency would impair the nuclear shuttling of NF-
B (4)
. In fact, in most cases, an overlap of NF-
B staining with I
B
-positive nucleus is observed in LGMD2A biopsies (4)
. Our results explained also why a high level of the I
B
protein is present in the LGMD2A biopsies (4)
, an event that would necessitate the presence of NF-
B into the nucleus. The coexisting presence of NF-
B-negative and -positive nucleus in the biopsies might reflect the complexity of physiological context compared to the artificial cytokine stimulation of cultured cells and the importance of timing in NF-
B activation.
3) A large body of work has shown that transcription of NF-
B target genes is dependent on several mechanisms, including post-translational modification of NF-
B and interaction with other transcription factors, coactivators, or corepressors (37
38
39
40)
. We propose that limited proteolytic processing of NF-
B regulators by CAPN3 could be a potent mechanism in determining the panel of genes transcribed in response to individual NF-
B stimuli. Of particular interest, it has been shown that NF-
B activation induces I
B
, which in turn generates a negative feedback on the NF-
B pathway and modulates its activity temporally (9)
. This process, which is dependent on the duration of the input signal promoting NF-
B activation, leads to the induction of different sets of NF-
B target genes into the nucleus. In this context, it is conceivable that CAPN3, through proteolysis of I
B
, as previously proposed (4
, 41)
, could generate subtle variations of NF-
B activation and ultimately promote the expression of specific NF-
B target genes. In addition, susceptibility to calpain proteolytic cleavage has been demonstrated for some NF-
B cofactors, such as members of the signal transducers and activators of transcription (STAT) family STAT 3 and STAT5 (42)
, activating protein (AP-1), and CCAAT/enhancer binding protein family members (43
, 44)
. Hypothetically, some of these cofactors could be cleaved by CAPN3 to modulate antiapoptotic signals mediated by NF-
B in skeletal muscle.
In LGMD2A, a possible pathological mechanism following the deficiency in CAPN3 is an impairment of the antiapoptotic response of muscle, at least partly, because of insufficient levels of c-FLIP mRNA. The sequence of events could be as follows: NF-
B nuclear translocation, induction of transcription of I
B
and other early response genes, absence of expression of some antiapoptotic genes requiring the presence of CAPN3, and persistence of the apoptotic signal and therefore of NF-
B activation, leading to a cycle of I
B
over-expression and NF-
B nuclear export in vivo (Fig. 6
). Our results suggest a molecular mechanism, which at least partly explains the muscular wasting resulting from CAPN3 deficiency. A better understanding of NF-
B pathway regulation by CAPN3 in skeletal muscle could therefore open the way to therapeutic strategies for LGMD2A.
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| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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Received for publication April 10, 2007. Accepted for publication November 8, 2007.
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