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Istituto Pasteur-Fondazione Cenci Bolognetti and Department of Biochemical Sciences, University of Rome "La Sapienza," Rome, Italy
1Correspondence: Dipartimento di Scienze Biochimiche "A. Rossi Fanelli," Università di Roma "La Sapienza," Piazzale A. Moro 5, 00185 Rome, Italy. E-mail: maurizio.brunori{at}uniroma1.it
| ABSTRACT |
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ß
-protein when oxidized but not when bound to a gaseous ligand. Thus it appears that neuroglobin is a stress-responsive sensor for signal transduction in the brain, mediated by a ligand-linked conformational change of the protein.Brunori, M., Vallone, B. A globin for the brain.
Key Words: neuroprotection O2/NO binding structure
| INTRODUCTION |
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Analysis of complementary DNAs (expressed sequence tags) revealed partial globin sequences; these were used to clone and sequence the coding regions, to express the protein (151 aa), and to show that indeed it contains heme and binds O2 reversibly (p
2 torr). Despite the very limited amino acid sequence similarity with Mb and Hb (1)
, Ngb clearly belongs to the superfamily of globin. Determination of the three-dimensional (3D) structure of ferric (or met) human Ngb (2)
, and subsequently of murine Ngb (3)
, unveiled the classical globin fold, albeit endowed with some peculiar features of great significance. Analysis of the Ngb gene showed the presence of three introns instead of two, as customary for all vertebrate hemoglobins. The presence of an additional intron, first reported for leg-hemoglobin (4)
, had been predicted by Go (5)
from a structural analysis of the globin fold. Since Ngb is expressed also in the brain of fishes, amphibians, and birds (6)
, it is likely to be present in the nervous system of all vertebrates. Evolutionary analysis (1)
indicated that the lineage leading to neuroglobins must be older than 550 million years, which is the time calculated to correspond to the separation of hemoglobins and myoglobins in vertebrates (7)
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| Tissue-specific expression of Ngb |
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1 µM), thus apparently inadequate to fullfill the role of an O2 carrier typical of Mb, the concentration of which in the red muscles ranges from 100 to 400 µM (8)
100 µM) was found in the neurons of the mammalian retina (whereas it is absent in the retinal pigment epithelium; ref. 9
It seems undisputed that Ngb is present in brain neurons but absent from glia cells (10
, 11)
. The problem of distribution of Ngb in the mouse brain, attacked by in situ hybridization experiments, is still a matter of debate. In the study reporting the discovery of Ngb, Burmester et al. (1)
found that expression, although present more-or-less throughout, is not uniform. Using a specific polyclonal antibody (pAb; against a synthetic Ngb peptide), Wystub et al. (11)
reported expression of the protein in many brain sites including the cerebral cortex, thalamus, and hypothalamus and nuclei of cranial nerves in the brainstem and the cerebellum; although the data indicated a widespread distribution of Ngb, there are clear differences in the intensity of immunostaining. On the other hand, Mammen et al. (12)
using a radioactive mRNA probe observed a pattern of spatial expression with predominant (if not exclusive) localization in focal regions of the adult murine brain (Fig. 1
A, B). Microscopic examination showed that the probe is localized in the neuronal cell bodies; this finding was consistent with the observation by Sun et al. (13)
that Ngb is present in the cytoplasm of cultured cortical neurons (as found by immunofluorescence).
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Whether expression of Ngb in the brain is predominantly focal or more widely distributed (though at clearly variable levels) remains to be settled; however, if focal expression was confirmed, it will be a challenge to attempt a correlation between the presence of Ngb in some nuclei and specific neurophysiological effects. Interestingly, Mammen et al. (12)
pointed out that Ngb transcript is clearly detected in areas known to express high concentrations of NOS (nNOS), such as the lateral hypothalamus and the NTS (14)
. These loci are associated with limbic functions and adaptation to stress, which suggested that Ngb is expressed in areas involved in adaptive responses.
| Hypoxic stress responses |
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), since similar effects were obtained by addition of CoCl2 or deferoxamine. Soon afterward Zhu et al. (15)
Even more exciting was the first demonstration that Ngb has indeed a protective role against damage due to cerebral ischemia in vivo. Using occlusion (and reperfusion) of the middle cerebral artery in the rat as a model for stroke, Sun et al. (16)
paved the way to possible novel therapeutic approaches of this serious pathology of the humans. The effect of overexpressing Ngb in reducing ischemic cerebral injury may be seen in Fig. 1, C-F
, and vice versa the tissue damage and extent of functional deficit were worsened by reducing Ngb expression. It is of interest that these positive effects of Nbg were attributed largely to survival and/or recovery of the tissue in the so-called penumbral area around the occluded vessel. This is a zone where O2 concentration is obviously very low albeit not zero, while presumably NO concentration is higher than physiological, which (as discussed below) may be of some relevance for a possible mechanism whereby Ngb is involved in neuroprotection.
The O2 affinity of Ngb (p
2 torr; ref 1
; see also ref 17
and ref. therein), and its localization in the cytoplasm led naturally to assumption that its physiological role is O2 supply. Mb is generally considered an O2-reservoir, although the total amount of O2 stored in MbO2 may be sufficient to sustain hearts respiration for
1 s and probably is used in between beats. The other function of Mb (8)
is to facilitate intracellular O2 diffusion to mitochondria; since the physical mechanism is based on translational diffusion, to make a significant contribution intracellular concentration of Mb must be high enough to compensate for the (
20-fold) lower diffusion coefficient of the protein compared with the gas. Since the average concentration of Ngb in the brain (
1 µM) is
100 to 400-fold lower that that of Mb in the red muscles, a primary physiological role related to O2 transport is unlikely. In summary, the role of Ngb in the pathophysiology of the brain most probably is not O2 supply but more is likely related to its role in scavenging NO, as proposed also for Mb a few years ago (18
, 19)
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| Structure and ligand binding |
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2025%) similarity in amino acid sequence when compared with vertebrate Mb and Hb (1)
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First of all, the heme iron is hexacoordinate, with the proximal HisF8 and the distal HisE7 providing the two axial coordination bonds (distances
2.1 Å; Fig. 2
); thereby the metal is approximately in the plane of the prophyrin ring. The bond with HisE7 tends to force the E-helix toward the distal heme site, which is crowded by neighboring apolar residues (ValE11, PheCD1, and PheB10). The two axial coordination bonds are present not only in the ferric but also in the ferrous state of Ngb as already shown by optical and Resonance Raman spectroscopy (20
, 21)
. Therefore, binding of an external ligand (O2, CO, NO, or others such as cyanide for metNgb) demands the rupture of the distal bond with HisE7 (ref. 20
21
22
23
and ref. therein). The minimum scheme to describe binding of O2 (or other external ligands) is therefore as follows:
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B) to allow for O2(=L) binding. In principle this step may be quite slow, and in fact when reduced Ngb (species A) is mixed with an excess of L, the rate of complex formation is ligand-concentration independent and limited at
12 s half time. Albeit fairly slow, the rate-limiting dissociation of HisE7 (A
B) in reduced Ngb is surprisingly rapid compared with other hexacoordinate reduced hemeproteins (e.g., reduced horse heart cytochrome c). The kinetics of ligand rebinding after flash photolysis of species C has been extensively investigated by time resolved laser spectroscopy (optical and IR; refs. 20
The second outstanding feature in the structure of Ngb is the presence of a huge internal cavity (Fig. 2)
, which connects the heme distal and proximal sides and is in contact with the bulk through a channel flanked by TyrF3 (2
, 3)
. The volume of this tunnel (almost 300 Å3; ref. 3
) and its highly hydrophobic character are quite peculiar; on the distal side, it is connected with a couple of smaller cavities, one topologically corresponding to the so-called Xe4 cavity seen in sperm whale Mb (27)
. The "external" wall of this cavity is constituted by the EF corner, which was found to be characterized by an unusual mobility (in between residues 77 and 85) just like the CD corner (see ref. 3
).
Determination of the 3D structure of NgbCO was revealing (28)
. The most unexpected finding was the magnitude of the conformational change associated to binding of CO, which demands the rupture of the distal HisE7-iron bond. In NgbCO, HisE7 stays (almost) put and binding of the gas is associated to a large sliding motion of the heme toward the interior and an extensive reorganization of the internal cavity (see Fig. 2
). The total volume of the tunnel is almost unchanged, but while its distal branch extends toward the surface, the proximal one is obliterated by the heme in its new position. Thus one may venture to propose that a role for the huge internal cavity may be to yield space for the heme, thereby facilitating the sliding motion linked to CO binding and the coupled structural changes (such as the change in external mobility of loops and control of access to the tunnel). Is such an unexpected conformational change related to the neuroprotective role of Ngb against hypoxia?
| A sensor for signal transduction? |
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A new vista that, albeit still questionable, is very interesting envisages that Ngb is a redox-coupled sensor regulating a G-protein coupled transduction pathway. The group led by Isao Morishima (30)
discovered that ferric human Ngb binds to the GDP-bound state of the
subunit of the heterotrimeric (G
ß
) G-protein, and thus acts as a guanine-nucleotide dissociation inhibitor (GDI); the GDP/GTP exchange process, which is vital for reassociation of G
to the Gß
, is inhibited in the met-Ngb/G
[GDP] complex. This liberates the Gß
and thereby activates the coupled signal transduction pathway, which is protective toward oxidative stress (31)
. The additional interesting findings were 1) that Ngb-CO is inactive as a GDI in the in vitro assay and thus the sensor efficacy depends on the redox/ligation state (30)
; and 2) that the GDI activity of met-Ngb can be modulated or even abolished by some site-directed mutations (32)
, particularly of Glu53 in the CD-D region (but also Arg97, Glu118, and Glu151).
The original inspiration for such an experiment, which was based on an alleged homology of the Ngb sequence with that of regulators of G-protein signaling and the corresponding domains of G-protein coupled receptor kinases, has been questioned (6)
. Moreover, met-Ngb from zebrafish is devoid of GDI activity (32)
, which may cast some doubts on the generality of this role in signaling. Nevertheless, it is intriguing that formation of a complex between G
and Ngb depends on the oxidation/ligation state of the hemeprotein and thus may be correlated to the substantial conformational changes observed (28)
in comparing the structure of met-Ngb and NgbCO, i.e., the ligand-linked heme sliding, the change in the topology of the big tunnel, and the reduction in the mobility of external loops (the EF and the CD corners).
Based on this overall scenario, Brunori et al. (29)
proposed that Ngb may be a sensor of the relative concentration of O2 and NO in the tissue. By rapid mixing experiments, they proved that NgbO2 and NO react very rapidly (k>107 M1·s1 at 5°C) with formation of nitrate, via a peroxinitrite (ONOO)Fe(III) bound intermediate, which mimics the same reaction studied in Mb and Hb (33
, 34)
. Brunori et al. (29)
presented a branched scheme (reproduced in Fig. 3
) which may acquire significance when [O2] tends to be lower and [NO] higher than physiological. The underlying assumption is that ferrous Ngb bound to O2 or NO would have the same 3D structure observed for NgbCO and thereby would be devoid of GDI activity. The O2-binding pathway in Fig. 3
, with subsequent very rapid oxidation by NO, would have the double effect of competing with the direct formation NgbNO (presumably ineffective as a GDI) and of disposing of NO, which is harmful to cellular respiration (18
, 35
and ref. therein). These conditions may possibly correspond to those prevailing in the so-called penumbral area around an occluded vessel, which is hypoxic and experiencing an overproduction of NO because of induced expression of NO synthases. As shown by David Greenberg and colleagues (16)
, it is in the penumbral area that the level of expression of Ngb makes a dramatic difference in the level of neuroprotection. Moreover (as outlined above), it is intriguing that Ngb is detected in areas of the brain that are known to express higher concentrations of NOS (12
, 14)
. In this scenario, the possibility that Ngb may also play a role in the degradation and quenching of reactive oxygen species should not be overlooked given that harmful effects of hypoxia on viability of the neuron have been observed after reperfusion of a tissue subject to what Salvador Moncada calls NO hypoxia (due to inhibition of cytochrome-c-oxidase by NO, see ref 18
, 35
). In any case, these possible functions of Ngb demand the demonstration that the brain expresses a significant met-Ngb reductase activity, which is necessary to restore the reduced state competent in O2 binding. More work ahead is demanded for, but more exciting results are expected.
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| ACKNOWLEDGMENTS |
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Received for publication June 8, 2006. Accepted for publication June 23, 2006.
| REFERENCES |
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protein guanine nucleotide dissociation inhibitor. J. Biol. Chem. 278,36505-36512
-dimers in growth and differentiation. Oncogene 20,1653-1660[CrossRef][Medline]This article has been cited by other articles:
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A. R. Cossins, D. R. Williams, N. S. Foulkes, M. Berenbrink, and A. Kipar Diverse cell-specific expression of myoglobin isoforms in brain, kidney, gill and liver of the hypoxia-tolerant carp and zebrafish J. Exp. Biol., March 1, 2009; 212(5): 627 - 638. [Abstract] [Full Text] [PDF] |
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A. N. Schechter Hemoglobin research and the origins of molecular medicine Blood, November 15, 2008; 112(10): 3927 - 3938. [Abstract] [Full Text] [PDF] |
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