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(The FASEB Journal. 2000;14:904-912.)
© 2000 FASEB

Identification of a novel partner of RNA polymerase II subunit 11, Che-1, which interacts with and affects the growth suppression function of Rb

MAURIZIO FANCIULLI*1,2, TIZIANA BRUNO*, MONICA DI PADOVA*, ROBERTA DE ANGELIS*,{dagger}, SIMONA IEZZI*, CARLA IACOBINI*, ARISTIDE FLORIDI*,{dagger} and CLAUDIO PASSANANTI{ddagger}1,2

* Cell Metabolism and Pharmacokinetics Laboratory, Regina Elena Cancer Institute, 00158 Rome, Italy;
{dagger} Department of Experimental Medicine, University of L’Aquila, 67100 L’Aquila, Italy; and
{ddagger} Istituto di Tecnologie Biomediche, CNR, 00137 Rome, Italy

1Correspondence: Cell Metabolism and Pharmacokinetics Laboratory, Regina Elena Cancer Institute, Via Delle Messi d’oro 156, 00158 Rome, Italy. E-mail: fanciulli{at}crs.ifo.it; Istituto di Tecnologie Biomediche, CNR, Viale Marx 43, 00137 Rome, Italy. E-mail: passananti{at}itbm.rm.cnr.it


   ABSTRACT
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
hRPB11 is a core subunit of RNA polymerase II (pol II) specifically down-regulated on doxorubicin (dox) treatment. Levels of this protein profoundly affect cell differentiation, cell proliferation, and tumorigenicity in vivo. Here we describe Che-1, a novel human protein that interacts with hRPB11. Che-1 possesses a domain of high homology with Escherichia coli RNA polymerase {varsigma}-factor 70 and SV40 large T antigen. In addition, we report that Che-1 interacts with the retinoblastoma susceptibility gene (Rb) by two distinct domains. Functionally, we demonstrate that Che-1 represses the growth suppression function of Rb, counteracting the inhibitory action of Rb on the trans-activation function of E2F1. These results identify a novel protein that binds Rb and the core of pol II, and suggest that Che-1 may be part of transcription regulatory complex.—Fanciulli, M., Bruno, T, Di Padova, M., De Angelis, R., Iezzi, S., Iacobini, C, Floridi, A., Passananti, C. Identification of a novel partner of RNA polymerase II subunit 11, Che-1, which interacts with and affects the growth suppression function of Rb.


Key Words: RNA polymerase II • hRPB11 • Che-1 • Retinoblastoma susceptibility gene


   INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
THE EUKARYOTIC HETEROMERIC enzyme RNA polymerase II consists of at least 12 different subunits (1) . Despite the fundamental role of pol II in initiation, elongation, and termination of mRNA transcription, little is known about the specific functions of its individual subunits, associations between subunits, or possible contacts between subunits and RNA polymerase holoenzyme components or transcription factors. Some evidence suggests that pol II in yeast may influence gene expression by altering its subunit composition in response to nutrient or thermal stress (2 3 4) . The issue of subunit variation of mammalian pol II, however, has not been yet investigated. We have previously cloned the pol II subunit hRPB11 and have shown the involvement of this protein in dox-mediated cellular toxicity and cellular differentiation (5 6 7) . hRPB11 contains two amino acid sequences ({alpha} motif) with limited homology to the {alpha} subunit of Escherichia coli RNA polymerase, and we have shown that it interacts with hRPB3, another human RNA pol II {alpha}-like subunit (6) . The hRPB11 amino-terminal {alpha} motif is necessary for this interaction and it appears to be the unique contact site of hRPB11 with pol II. The heterodimer hRPB11/3 is considered the functional counterpart of the bacterial {alpha} subunit homodimer (8 , 9) . The eubacterial {alpha} subunit performs at least three critical functions: it serves as the initiator for RNA pol assembly, it participates in promoter recognition by sequence-specific protein–DNA interaction, and it is the target for transcriptional regulation by binding to a specific set of transcriptional activator proteins (10 11 12) . To better understand hRPB11 function, the yeast two-hybrid protein interaction system was used to search for proteins that associate with hRPB11. The screen resulted in the identification of a novel human protein, Che-1 (the sequence of the rat homologue of Che-1, named AATF, was recently deposited in GenBank; accession number: AJ238717). This protein shares homology with SV40 large T antigen and with E. coli {varsigma}-factor 70. We provide evidence that Che-1 binds Rb in vitro and in vivo. Moreover, we clearly demonstrate that Che-1 affects the growth suppression function of Rb by relieving its inhibitory effect on E2F1 trans-activating function and implicating Che-1 in the regulation of the cell cycle.


   MATERIALS AND METHODS
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Yeast two-hybrid assays
For two-hybrid screening, the GAL4 DNA binding domain of the pGBT9 vector (Clontech, Palo Alto, Calif.) was fused to the complete open reading frame (ORF) of human RPB11 and used to screen a human skeletal muscle cDNA library (Clontech) as described previously (6) . Three constructs carrying different hRPB11 amino-terminal deletions used in two-hybrid assay have also been described (6) . The construct 11Que, carrying a deletion of the last 30 amino acid of hRPB11, was generated by polymerase chain reaction (PCR) and cloned in frame in the pGBT9 vector. For two-hybrid analysis of the Che-1/Rb interaction, Che-1 portion from aa 248 to aa 476 and the complete ORF of Rb were cloned into pGBT9 and pGAD424 (Clontech), respectively.

Che-1 cloning and expression constructs
The partial cDNA sequence encoded by the clone isolated from the two-hybrid screen was extended using 5' Marathon RACE reaction (Clontech) on human skeletal muscle mRNA, following the conditions detailed by the manufacturer. The complete ORF was amplified by PCR and cloned into a pCS-MT myc-tagged mammalian expression vector and into pGEX4T3 (Bio-Rad, Hercules, Calif.) to generate a glutathione-S-transferase (GST) -Che-1 fusion protein. The complete ORF of Rb was generated by PCR and cloned into pcDNA3 (Invitrogen, San Diego, Calif.) mammalian expression and pGEX4T1 (Bio-Rad) vectors. hRPB11 and its deletions were fused to GST cloning in pGEX4T1 vector the same inserts contained in pGBT9 constructs. The construct carrying hRPB11 fused to 6xHis tag has been already described (5) . E2F1 mammalian expression vector and DHFR-luciferase vector were a kind gift from Prof. Levrero (University of Rome, ‘La Sapienza’). Che-1 fragments and deletions mutants were produced by PCR and cloned into the pCS-MT vector, which contains the Sp6 binding site. All constructs produced were sequenced by Sequenase reaction (Amersham, Arlington Heights, Ill.) according to the manufacturer’s instructions.

Northern blot analysis
Filters containing poly(A)+ RNA from 16 normal human tissues (Clontech) were hybridized with 32P-labeled Che-1 cDNA using Quikhyb (Stratagene, San Diego, Calif.) according to manufacturer’s instructions.

Purification of GST fusion proteins and in vitro protein interaction
BL21 bacteria strain was transformed with GST fusion protein constructs and the proteins were purified on glutathione-Sepharose resin (Pharmacia, Piscataway, N.J.). For protein–protein interaction assays, comparable amounts of resin-bound GST fusion proteins were incubated with in vitro-translated proteins in NETN buffer (20 mM Tris-HCl, pH 8.0, 100 mM NaCl, 1 mM EDTA, and 0.5% Nonidet P-40) for 1 h at 4°C. The resins were then pelleted and extensively washed in the same buffer. The bound proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE); the gel was then fixed, incubated in Enlighting solution (Du Pont, Wilmington, De.), dried, and exposed for fluorography.

In vitro transcription and translation
In vitro transcription and translation were carried out with TNT-coupled reticulocyte lysate systems (Promega, Madison, Wis.) and L-[35S]methionine (>1000 Ci/mmol; Amersham) according to the manufacturer.

Cells and transfections
Saos-2 and Cos7 cell lines were grown in Dulbecco’s modified Eagle’s medium (DMEM), supplemented with 10% fetal calf serum, and transfections were carried out by N, N-bis-(2-hydroxiethil)-2-aminoethanesulfonic acid (BES) -calcium phosphate precipitation as described (6) . U2OS cells were grown in RPMI 1640 medium supplemented with 10% fetal calf serum.

Immunoprecipitations and Western blot analysis
Cos7 transfected cells were rinsed three times with ice-cold phosphate-buffered saline, harvested, centrifuged at 4°C, and cell pellets were lysed by incubation at 4°C for 1 h in 500 µl lysis buffer (50 mM Tris, pH 8.0, 250 mM NaCl, 10 mM MgCl2, 1 mM PMSF, 10 mg/ml leupeptin) supplemented with 0.2% Nonidet P-40. Supernatants were cleared by centrifugation, precleared using 20 µl protein A/protein G beads (Santa Cruz, Santa Cruz, Calif.), and immunoprecipitated by standard procedures using mouse anti-myc monoclonal antibody clone 9e10 (Invitrogen). Western blots were prepared by standard procedures and a mouse monoclonal antibody direct against Rb (PharMingen; San Diego, Calif., cat. 14001) was used to detect Rb by chemiluminescence reaction (Amersham). For Che-1 antiserum production, New Zealand rabbits were immunized four times with 250 mg of the purified peptide LVGLQUEELLFQYPDT (aa 287–301) every 2 wk using Freund’s adijuvants (Difco, Detroit, Mich.); antiserum was collected 3 days after the last injection. The specific polyclonal antiserum was purified by column chromatography using the Che-1 peptide coupled to activated EAH Sepharose. U2OS cells were lysed as described above. Supernatants recovered and precleared were immunoprecipitated by anti-Rb monoclonal antibody or anti-myc monoclonal antibody as a negative control. The bound proteins were separated by SDS-PAGE, transferred to PVDF membranes (Millipore), and probed with anti-Che-1 antibody. Immunoreactivity was detected by chemiluminescence reaction. For Che-1 expression analysis, an equal amount (30 µg) of total proteins was electrophoresed on 10% polyacrylamide gel, transferred to PVDF membrane, and probed with anti-Che-1 antibody. Che-1 expression levels were detected by chemiluminescent visualization. The relative intensity of the bands was quantified by densitometric analysis and normalized to the relative HSP70 protein levels detected using a specific monoclonal antibody (Santa Cruz, cat. W27).

Luciferase activity assay
BES-calcium phosphate precipitation was used to transiently transfect Saos-2 cells with DHFR luciferase reporter, the indicated expression vectors, and with pCMVß-gal expression plasmid as an internal standard. The transfection medium was replaced by DMEM supplemented with 10% fetal calf serum 18 h after transfection. After incubation for 48 h, luciferase was assayed using reagents from Promega according to the manufacturer’s instructions. ß-Galactosidase was assayed using a ß-galactosidase assay kit (Tropix, Bedford, Mass.).

Colony-forming efficiency assay
Colony-forming efficiency assays were performed after transfection of Saos-2 cells with the indicated expression vectors. All the transfections were performed using the same amount of plasmids carrying G-418 resistance. G-418 selection was initiated 2 days after transfection; dishes were stained with methylene blue 14 days later.


   RESULTS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Human Che-1 binds to hRPB11
We used the yeast two-hybrid system to search for proteins capable of physically interacting with hRPB11 (13) . A cDNA fragment encoding the 117 amino acid residues of full-length hRPB11 was fused in-frame with the yeast Gal4 DNA binding domain of the vector pGBT9 (Clontech). Due to the high level of hRPB11 transcription in human skeletal muscle, a two-hybrid cDNA library from this tissue was screened. Thirteen positive cDNAs with different degree of interaction with hRPB11 were isolated, and one clone of 1167 bp encoding a novel protein, Che-1, was further characterized. To define whether the domain of hRPB11 required for interaction with Che-1 was the same as that involved in the binding to hRPB3, three progressive amino-terminal truncated hRPB11 derivatives—11QUI, 11QUO, and 11QUA (Fig. 1A )—were used in the yeast two-hybrid assay. All three constructs retained Che-1 binding capacity (Fig. 1B ). In contrast, 11QUE, a construct missing the hRPB11 leucine-rich carboxyl-terminal {alpha} motif (Fig. 1A ), was unable to interact with Che-1 (Fig. 1B ). A two-hybrid screening, performed using Che-1 as bait, isolated seven clones encoding hRPB11 (data not shown), thus confirming the interaction between these two proteins. To confirm hRPB11-Che-1 binding in a cell-free system, we prepared the complete hRPB11 coding sequence and its deletions in E. coli as GST fusion proteins. These fusion proteins were then tested for their ability to bind 35S-labeled Che-1. Consistent with the two-hybrid assay, only the fusion proteins containing the carboxyl-terminal {alpha} motif of hRPB11 specifically bound Che-1 (Fig. 1C ). We conclude, therefore, that hRPB11 binds Che-1 both in vivo and in vitro through its leucine-rich carboxyl-terminal {alpha} motif.



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Figure 1. Human Che-1 binds hRPB11. A) Schematic representation of hRPB11 showing the nested deletions used in these experiments. The horizontal bars represent the amino acid sequence in each construct. B) HF7c yeast cells were cotransformed with the indicated constructs and plated onto SD media lacking leucine and tryptophan (-LW) to verify the expression of both bait (Trp+) and prey (Leu+) plasmids; onto a -LW plate for assaying ß-galactosidase activity (data not shown); or onto media lacking leucine, tryptophan, and histidine (-LWH) for examining the interaction between bait and prey proteins. C) GST pull-down assay of 35S-labeled Che-1 using GST, GST-hRPB11, or GST-hRPB11 deletions Sepharose beads.

Characterization of Che-1
To assess the expression pattern of the Che-1 transcript, 32P-labeled Che-1 cDNA was used to probe multiple tissue Northern blots. A single hybridizing signal of ~2.1 kb was observed (Fig. 2A ), which was most abundant in heart, skeletal muscle, and testis, thus resembling the pattern of hRPB11 expression (5) . The Che-1 cDNA isolated lacked an initiating methionine codon and was therefore assumed to be partial. 5'-RACE, used with human skeletal muscle cDNA to extend the Che-1 clone, resulted in the addition of another 915 bp of novel sequence that, when finally assembled, produced a Che-1 cDNA of 2082 bp consistent with the band detected by Northern blot. An initiating methionine codon was located 174 bp from the 5'end producing a 558 amino acid open reading frame (Fig. 2B ). Inspection of the predicted protein sequence suggested a molecular mass of ~62.3 kDa. Che-1 is not homologous to any previously described protein. Che-1 amino acid sequence analysis revealed the presence of a canonical leucine zipper motif and three nuclear receptor binding LXXLL consensus sequences (15 , 16) distributed throughout the protein (Fig. 2B ). Comparison by Genbank BLAST (14) of the Che-1 protein revealed a 32 amino acid fragment of relevant homology between Che-1 and E. coli {varsigma}-factor 70 (Fig. 2C ). Moreover, two short domains of homology to SV40 early gene large T were also observed (Fig. 2C ). The production of an affinity-purified polyclonal antibody anti-Che-1 allowed a Western blot analysis of this protein, confirming its molecular weight (Fig. 2D ). Che-1 resulted expressed in all human cell lines examined except Saos-2 cells.



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Figure 2. A) Expression profile of Che-1 mRNA in various human tissues. Filters containing poly(A)+ RNA from 16 normal human tissues (Clontech) were hybridized with 32P-labeled Che-1. B) Deduced amino acid sequence of Che-1. The putative leucine zipper motif is underlined and the three nuclear receptor binding LXXLL motifs are indicated by bold italics. C) Sequence similarity between Che-1, bacterial RNA polymerase subunit {varsigma}70, and large T antigen of SV40. Colon indicates homologous residues; a period indicates conserved residues. The GenBank accession number of human Che-1 cDNA sequence is AF083208. D) Expression profile of Che-1 protein in various human transformed cell lines. Western blot analysis was performed using an anti-Che-1 affinity-purified polyclonal antibody.

Che-1 interacts with Rb
It has previously been demonstrated that simian virus 40 large T antigen can form complexes with the Rb gene product by a consensus Rb binding sequence L-X-C-X-E (17 18 19) . Since Che-1 shares a region of strong homology with large T of SV40, partially overlapping Rb binding region, we tested whether Che-1 protein has the capacity for direct and specific interaction with Rb. 35S-labeled Rb protein was incubated with bacterial recombinant GST and GST-Che-1 fusion proteins. Figure 3A shows that although GST control protein did not bind Rb, GST-Che-1 was able to bind Rb. Consistent with these results, GST-Rb was also able to interact specifically with 35S-labeled Che-1 (Fig. 3B ). To provide evidence that Che-1 also associates with Rb protein in vivo, expression vectors for Rb and myc-tagged Che-1 were cotransfected into COS7 cells. Immunoprecipitation of tagged Che-1, followed by Western blot analysis of the precipitants for the presence of Rb, was indicative of an interaction with both iper-phosphorylated and ipo-phosphorylated forms of Rb, although this last form was clearly present in a larger amount. Myc-tag alone showed no binding to Rb (Fig. 3C ). Next we asked whether Che-1 and Rb could coimmunoprecipitate without overexpression of the proteins. Extracts from U2OS human cells were immunoprecipitated with anti-Rb antibody and the precipitated proteins were assayed by Western blot for the presence of Che-1. The results demonstrate that a relevant amount of cellular Che-1 is indeed complexed with Rb protein (Fig. 3D ), indicating a physiological interaction between Che-1 and the tumor suppressor Rb. This specific interaction was further confirmed in a two-hybrid assay performed by cotransforming Rb fused to the activation domain of Gal4 with pGBT9/Che-1 or with pGBT9/lamin and pGBT9 empty vector as negative controls. Figure 3E shows that whereas pGBT9/Che-1 was able to bind Rb, pGBT9/lamin and pGBT9 empty vector did not show any significant interaction.



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Figure 3. Che-1 interacts with Rb protein. A) Labeled Rb was subjected to GST pull-down analysis using GST or GST-Che-1 beads. B) Labeled Che-1 was subjected to GST pull-down analysis using GST or GST-Rb beads. C) Whole-cell extracts of COS7 cells transfected with Rb and myc-Che-1 or empty myc-tag expression vector were immunoprecipitated with anti-myc monoclonal antibody and analyzed by Western blot using anti-Rb monoclonal antibody. D) Whole cell extracts of U2OS cells were immunoprecipitated with anti-myc as a negative control or with anti-Rb and analyzed by Western blot using anti-Che-1 polyclonal antibody. E) Yeast two-hybrid assay. HF7c yeast cells were cotransformed with the indicated constructs and plated onto SD media lacking leucine and tryptophan (-LW), to verify the expression of both bait (Trp+) and prey (Leu+) plasmids, or onto media lacking leucine, tryptophan, and histidine (-LWH) for examining the interaction between bait and prey proteins.

Che-1 contacts hRPB11 and Rb with different protein regions
To test the possibility that Che-1 may mediate complex formation between hRPB11 and Rb proteins via direct contact, we determined the regions of Che-1 involved in these interactions. Using a series of six polypeptides covering the whole Che-1 protein, we performed in vitro transcription/translation and GST pull-down assays. Two Che-1 sequential peptide fragments 271–370 and 371–470 were able to bind GST-Rb fusion protein (Fig. 4A ), indicating the presence of two distinct domains involved in the contact with Rb. Since peptide 271–370 could also bind GST-hRPB11, to determine whether GST-hRPB11 and GST-Rb compete for the same binding site within Che-1 fragment 271–370, we further divided this region into two smaller polypeptides. As shown in Fig. 4B , two distinct Che-1 domains are involved in the interaction with hRPB11 and Rb, respectively. The fragment 271–313, containing the putative leucine zipper region (Fig. 2B ), is responsible for hRPB11 binding. This finding is consistent with the presence of a leucine-rich {alpha} motif within the carboxyl-terminal of hRPB11 responsible for the binding to Che-1. It is noteworthy that the Che-1 fragment 314–370, which also interacts with Rb, possesses the extensive homology to the SV40 large T early gene (Fig. 2C ). Since these interacting regions are adjacent, it is still possible that the binding of Rb with Che-1 displaces it from hRPB11. To test this hypothesis, we performed a pull-down experiment using 6xHis-hRPB11 bound to Ni-NTA agarose beads and 35S-labeled-Che-1, incubated with eluted GST-Rb or GST, as control. Figure 4C shows that the presence of Rb did not decrease the ability of Che-1 to contact hRPB11. Therefore, we conclude that Che-1 binds hRPB11 and Rb by different protein regions (Fig. 4D ).



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Figure 4. Che-1 interacts with hRPB11 and Rb by different domains. A, B) GST pull-down assay of 35S-labeled Che-1 fragments using GST, GST-hRPB11, or GST-Rb Sepharose beads. Amino acid end-points for each Che-1 construct are indicated above each lane. C) Rb does not inhibit hRPB11/Che-1 interaction. Labeled Che-1 was subjected to a pull-down analysis by using Ni-NTA agarose beads covered with 6x His-hRPB11 in presence of eluted GST or GST-Rb fusion protein. D) Schematic representation of the binding regions of Che-1 with hRPB11 and Rb.

Che-1 affects the inhibitory effect of Rb on E2F1
The binding of Che-1 to Rb may have important implications for the functions of this protein. Rb interacts with E2F1, a transcription factor critical for G1/S transition, and suppresses its trans-activating function (20 , 21) . This results a strong correlation between Rb/E2F1 complex formation and Rb blockade of the G1/S transition (22 23 24) . To assess whether binding of Che-1 to Rb perturbs the regulation of E2F1 activity, Che-1, E2F1 and Rb mammalian expression plasmids were cotransfected with an E2F1 reporter vector (DHFR-luciferase) (25) into human Rb-negative Saos-2 cells. This experiment resulted in significant reduction of the inhibitory effect of Rb on E2F1 trans-activating function (Fig. 5A ). This inhibition of Rb repression by Che-1 was also observed when a Gal4-E2F1 fusion and a Gal4-dependent reporter were used (data not shown). These results are consistent with Che-1/Rb complex formation relieving the suppression of E2F1 trans-activating function or stimulation of E2F1 activity by a Rb-independent phenomenon. The latter hypothesis was abandoned when we tested the ability of Che-1 to stimulate E2F1 reporter activity. Figure 5B, C shows that Che-1, when transfected alone or cotransfected with E2F1, did not significantly increase either basal transcription independent of E2F1/Rb activity or E2F1 trans-activating function in the absence of Rb. On the basis of these results, it seems that the activation of E2F1 by Che-1 may depend on the ability of Che-1 to form a complex with Rb. In this case, then, one would expect Che-1 mutants lacking the Rb binding sites to be defective in E2F1 activation. We therefore tested two Che-1 mutants (Fig. 5D ) in an E2F1 repression assay. Figure 5C shows that the mutant {Delta}1 lacking the Che-1 region 371–558 did not significantly inhibit Rb repression of E2F1 activity. Consistent with this finding, the Che-1 mutant {Delta}2 lacking both Rb binding regions of Che-1 did not counteract the activity of Rb on E2F1.



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Figure 5. Che-1 counteracts the ability of Rb to repress E2F1 activity. A) Saos-2 cells were transiently transfected with 1 µg DHFR-luciferase reporter and (where indicated) 50 ng pCMV E2F1 expression vector, 200 ng pCMV Rb, and 0.5, 1, or 2 µg of pCMV Che-1. B, C). Che-1 does not directly affect basal transcription or E2F1 activity. Saos-2 cells were transiently transfected with 1 µg DHFR-luciferase reporter and, where indicated, (+E2F1), 50 ng pCMV E2F1 expression vector, 0.5, 1, or 2 µg of pCMV Che-1 (+Che-1) were added. Data are presented as the mean ± SD from three independent experiments performed in duplicate. D) Schematic map indicating deletion mutants of Che-1. E) Saos-2 cells were transiently transfected with 1 µg DHFR-luciferase reporter and, where indicated, 50 ng pCMV E2F1 expression vector, 200 ng pCMV Rb, and 2 µg of pCMV Che-1, pCMV Che-1 {Delta}1, or pCMV Che-1 {Delta}2, respectively. Data are presented as the mean ± SD from three independent experiments performed in duplicate.

Che-1 inhibits the growth suppression activity of Rb
To further analyze the effect of Che-1 on Rb activity, a colony-forming efficiency assay was performed. Parallel plates containing the same number of Saos-2 cells were transfected with Rb and Che-1 expression plasmids, selected with neomicin, and the number of colonies per plate was screened 14 days later. Figure 6 shows representative plates (Fig. 6A ) and colony counts (Fig. 6B ) from these experiments. When transfected with Rb, Saos-2 cells showed a ~60% reduction in colony-forming efficiency compared to cells transfected with the empty vector. Cells cotransfected with Rb and Che-1 showed only a 27% reduction, whereas cells transfected with Che-1 alone did not exhibit further changes in colony-forming efficiency. Consistent with the results on E2F1 activity, Che-1 mutants lacking the Rb binding sites did not show any effect on growth suppression activity of Rb.



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Figure 6. Che-1 arrests the growth suppression function of Rb. A) Saos-2 cells were transiently transfected with empty pCMV expression vector (control), pCMV Rb, pCMV Che-1, pCMV Che-1 {Delta}1, or pCMV Che-1 {Delta}2 and selected for 14 days in neomycin. Parallel plates were stained with methylene blue and scored. Representative Saos-2 plates are shown. B) Calculation of percent reduction in colony-forming efficiency. Data are presented as the mean ± SD from three independent experiments performed in quadruplicate.


   DISCUSSION
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ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Eukaryotic RNA polymerase II is a multisubunit enzymatic complex consisting of 10–12 subunits involved in mRNAs synthesis (1) . Besides the well-documented transcriptional regulatory role of the carboxyl-terminal domain of the largest subunit (26 , 27) , other subunits of pol II have been shown to be potential targets for transcriptional regulators (28 29 30 31 32) .

We and others have recently demonstrated the interaction between hRPB11 and hRPB3 (6 , 33 34 35) , indicating a fundamental structural role for this heterodimer. On the other hand, the involvement of hRPB11 in dox-mediated cellular toxicity and cellular differentiation suggests an additional regulative role for this subunit. Here we describe the isolation and characterization of Che-1, a novel partner of hRPB11. Che-1 interacts with the hRPB11 carboxyl-terminal {alpha} motif, which is distinct from the hRPB3 binding domain (6) . Thus, it is possible that hRPB11 can bind to hRPB3 and to Che-1 simultaneously, acting as a bridge between Che-1 and pol II. Che-1 has a molecular mass of ~62.3 kDa and is not homologous to any previously described protein. Consistent with the interaction to hRPB11, Che-1 shares a domain of striking homology with E. coli RNA polymerase {varsigma}-factor 70, supporting the hypothesis that Che-1 could be a component of the pol II holoenzyme. In addition, analysis of Che-1 amino acid sequence reveals the presence of several potential protein–protein interaction domains, suggesting that Che-1 brings different signaling molecules to the pol II.

Here we provide evidence that Che-1 interacts with Rb protein, and as such could represent the first described link between Rb and the core of pol II. Two distinct portions of Che-1 protein mediate interaction with Rb; significantly, one of them contains a relevant homology with SV40 large T. The binding of Che-1 to Rb affects the growth suppression function of Rb by in part relieving its inhibition of E2F1 transcriptional activity. In fact, Che-1 mutants lacking Rb binding domains did not affect the activity of Rb on E2F1. Thus, our data indicate that Che-1 binds Rb and perturbs its growth suppression function.

Rb represses transcription by masking the E2F1 trans-activation (36) , probably tethering the E2F1 protein to histone deacetylase HDAC1, forming a complex that prevents expression from E2F-bound promoters (37 38 39) . On the basis of these observations, we could assume that Che-1 exerts its function by recruiting pol II and displacing Rb from E2F1. Alternatively, Che-1 could compete with HDAC1 for the Rb binding site, thus removing HDAC1 from the complex Rb-E2F1. Additional experimental data will provide new evidence to confirm or invalidate these hypothesis and to better characterize the role of Che-1 on the regulation of transcription.


   ACKNOWLEDGMENTS
 
We acknowledge Dr. A. R. Mackay for critical reading and Drs. L. Monaco and S. Soddu for fruitful discussions. We are grateful to Dr. F. Di Modugno for the purification of the anti-Che-1 antibody. Miss R. Bruno is gratefully acknowledged for art work. This work was supported by Ministero della Sanità, Telethon project A63, and MURST 60%. M.D.P. is the recipient of an F.I.R.C. fellowship.


   FOOTNOTES
 
2 These authors contributed equally to this work.

Received for publication October 30, 1999. Revised for publication November 24, 1999.


   REFERENCES
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 

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