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(The FASEB Journal. 2000;14:581-592.)
© 2000 FASEB

STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams-Beuren syndrome deletion

NIEVES PEZZI*, IGNACIO PRIETO*, LEONOR KREMER*, LUIS A. PÉREZ JURADO{dagger}, CARMEN VALERO{dagger}, JESÚS DEL MAZO{ddagger}, CARLOS MARTÍNEZ-A* and JOSÉ L. BARBERO*1

* Department of Immunology and Oncology, Centro Nacional de Biotecnología, UAM Campus de Cantoblanco, Madrid E-28049;
{dagger} Servicio de Genética, Hospital Universitario La Paz, Madrid E-28046; and
{ddagger} Departamento de Biología Celular y Desarrollo, CIB/CSIC, Veláquez 144, Madrid E-28006, Spain

1Correspondence: Department of Immunology and Oncology, Centro Nacional de Biotecnología, UAM Campus de Cantoblanco, Madrid E-28049 Spain. E-mail jlbarbero{at}cnb.uam.es


   ABSTRACT
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Chromatin rearrangements in the meiotic prophase are characterized by the assembly and disassembly of synaptonemal complexes (SC), a protein structure that stabilizes the pairing of homologous chromosomes in prophase. We report the identification of human and mouse cDNA coding for stromalin 3 (STAG3), a new mammalian stromalin member of the synaptonemal complex. The stromalins are a group of highly conserved proteins, represented in several organisms from yeast to humans. Stromalins are characterized by the stromalin conservative domain (SCD), a specific motif found in all proteins of the family described to date. STAG3 is expressed specifically in testis, and immunolocalization experiments show that STAG3 is associated to the synaptonemal complex. As the protein encoded by the homologous gene (Scc3p) in Saccharomyces cerevisiae was found to be a subunit of a cohesin complex that binds chromosomes until the onset of anaphase, our data suggest that STAG3 is involved in chromosome pairing and maintenance of synaptonemal complex structure during the pachytene phase of meiosis in a cohesin-like manner. We have mapped the human STAG3 gene to the 7q22 region of chromosome 7; six human STAG3-related genes have also been mapped: two at 7q22 near the functional gene, one at 7q11.22, and three at 7q11.23, two of them flanking the breakpoints commonly associated with the Williams-Beuren syndrome (WBS) deletion. Since the WBS deletion occurs as a consequence of unequal meiotic crossing over, we suggest that STAG3 duplications predispose to germline chromosomal rearrangement within this region.—Pezzi, N., Prieto, I., Kremer, L., Pérez Jurado, L. A., Valero, C., del Mazo, J., Martínez-A., C., Barbero, J. L. STAG3, a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the Williams-Beuren syndrome deletion.


Key Words: stromal antigens • stromalin • meiosis • cohesins


   INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
REPLICATION AND SEGREGATION of the genetic information are fundamental processes in the cellular life cycle. Pairing of homologous chromosomes and cohesion between sister chromatids must be established during different stages of meiosis to ensure accurate segregation of chromosomes (1) . Several proteins implicated in chromosome synapsis in meiosis have recently been characterized (2 3 4 5) . We have identified and characterized a new family of highly conserved nuclear proteins, which we term stromal antigens or stromalins, since the cDNA encoding the first member, SA1, was isolated from a murine bone marrow stromal cell line (6) . Using polymerase chain reaction (PCR) strategy, we cloned a Drosophila melanogaster homologue of the mammalian stromalins, DSA (7) . Based on amino acid sequence homology, particularly of the amino-terminal region of the stromalin molecule, or stromalin conservative domain (SCD), we deduced new open reading frames from the gene database for putative stromalin-like molecules from Caenorhabditis elegans (8) , a new member for D. melanogaster (DSA2) (GenBank Acc. No. AC005847), Arabidopsis thaliana (A. Valdeolmillos et al., unpublished results), Schizosaccharomyces pombe (EMBL Acc. No. Z98597), and Saccharomyces cerevisiae (9) . We reported that mammalian SA1 and SA2 (recently approved nomenclature STAG1 and STAG2) and insect DSA proteins are fundamentally located in the nucleus (6) . There was no indication of the nature of their biological function, but the extraordinary identity (~99%) between the same member of mouse and human stromalin (considering the protein size of more than 1000 amino acids) suggested an essential role in the cell for these proteins. The S. cerevisiae stromalin homologue was first reported as an essential protein for yeast, since disruption mutants of the IRR1 gene have only two viable spores in each tetrad (9) . Toth et al. (10) recently found that temperature-sensitive mutants of IRR1 showed defects in sister chromatid cohesion; they demonstrated that the product of the IRR1 gene, which they renamed SCC3, is a subunit of the yeast cohesin complex. Here we report the identification of human and murine STAG3, a new stromalin family member that is specific to meiosis and is involved in chromosome pairing in meiosis I. We mapped the human STAG 3 gene to region 7q22 of chromosome 7 and have identified six human STAG3-related genes, all in chromosome 7. Two of these STAG3-related genes flank the Williams-Beuren syndrome (WBS) deletion.

WBS is a developmental disorder with multi-system manifestations, including distinctive facies, mental retardation with unique cognitive and personality profiles, cardiovascular stenoses, connective tissue anomalies, short stature, and occasional transient infantile hypercalcemia (11 12 13) . There are a few reports of affected parents and children confirming autosomal dominant inheritance, but the great majority of WBS cases are sporadic, with an estimated incidence of 1 in 20,000 live births, indicating a very high mutation rate (approx. 0.5x10-4). The spectrum of clinical manifestations is caused by a heterozygous deletion at chromosome band 7q11.23 (14) . Genetic and physical mapping of the deletions is consistent with clustering of common breakpoints in relatively small genomic regions at both sides of the elastin locus in the majority of informative patients (15 , 16) . Meiotic recombination between polymorphic markers proximal and distal to the deleted interval was documented in most informative families, suggesting unequal crossing-over between misaligned homologous regions as the most frequent mutational mechanism (17 , 18) . In some cases, no evidence for unequal interchromosomal exchange was found (18) , indicating that intrachromosomal meiotic or mitotic rearrangements may also be responsible. A large genomic duplication flanking the deleted interval has been proposed as the predisposing factor to misalignment of homologous regions during chromosome pairing (19) . There is also evidence for the existence of low copy number repeats in the region, which are additional putative contributions to the genomic instability (15 , 20) .

The cloning and characterization of STAG3 proteins and the location of duplicated copies of STAG3-related genes in the WBS deletion breakpoints may aid in understanding the evolution of the genomic duplication in humans and elucidating the possible role of STAG3 in the WBS mechanism of deletion.


   MATERIALS AND METHODS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Genomic clones, genomic structure, and sequence analysis
Genomic clones containing STAG3 sequences were identified by hybridizing two different STAG3 probes to a whole genome YAC library and a chromosome 7-specific cosmid library. Additional YACs containing D7S489 loci and/or STAG3-related ESTs were identified on public databases by BLAST searches and were obtained from the RZPD German Genome Project Resource Center (MPI Berlin-Dahlem, Germany). Sequence analysis was performed using the integrated NIX system provided by the British Human Genome Mapping Project (http://www.hgmp.mrc.ac.uk). Characterization of the genomic structure was obtained by comparison of multiple cDNA and genomic PCR amplifications with primers designed from the cDNA sequence.

Chromosomal mapping of human STAG3
Somatic cell hybrid lines containing a single human chromosome on a rodent background were obtained from the NIGMS Human Genetic Mutant Cell Repository (Coriell Institute for Medical Research, Camden, N.J.). DNA from the hybrid cell panel was screened by PCR using primers designed from several regions of the gene. To define the chromosomal localization of STAG3 loci, the Stanford G3 radiation hybrid panel, consisting of 83 hybrid cells containing human chromosome fragments on a hamster background, was used for PCR screening. Amplification results were submitted to the Stanford Human Genome Center (RHMAP Program, version 2.01; http://www.shgc.stanford.edu/RH/index.html), which returns framework markers linked to the subject locus with a LOD score higher than 6.0. STAG3-specific primers were STAG3E33F: 5'-CCTCTTAGATTCTACAGAGCTGG-3'; and STAG3E34R: 5'-ATTGAGCGAATCATTAGGAC-3'. Primers for the 24mer repeat in the first exon of STAG3-related transcripts were STAG3LE1F: 5'-GTCGTGGTCTGGCGTGTATT-3'; and STAG3LE1R: 5'-GGTGGCGCGTGCCAGACAC-3'.

Mapping of the orthologous murine gene
To map the murine locus, we used the EUCIB interspecific backcross panel consisting of two parental strain animals of Mus spretus and M. musculus C57BL/6J and 50 animals from the F2 generation (21) . Two primers were designed to amplify the 3' untranslated region of the cDNA: mStag3f: 5' CCTCTCCCCTTCTCCACTTA 3' and mStag3r: 5' CCTCCCTACCCAACTCCTAT 3'. The amplification products from the parental samples were sequenced to identify differences that could be typed by restriction analysis. The 50 progeny animals were then subjected to PCR amplification, followed by restriction analysis with AluI.

Screening of human and mouse cDNA libraries
We obtained by PCR a fragment of ~140 bp from the human sequence reported as the EST (Acc. No. Z45306), corresponding to sequence homologous to previously described STAG1 and STAG2 sequences (6) . The oligonucleotides used to amplified this fragment from human thymus cDNA were HSTAG3–1, 5'-ACAGGCTTTTGTCTTATTAAG-3' and HSTAG3–2, 5'-GGTCCATGAGGAAGCTGGCTAG-3'. This fragment was used as a 32P-labeled probe to screen a {lambda}gt11 cDNA human libraries (Clontech, Palo Alto, Calif.). To screen a Uni-ZAP mouse testis cDNA library (Stratagene, La Jolla, Calif.), we amplified 476 bp from the reported murine EST sequence (Acc. No. AA097991) as a probe. The specific mouse testis cDNA primers used were mStag3–1, 5'-CAGTGCTCTCGGATCCTGCTC-3' and mStag3–2, 5'-GGGGCCTTCAACACACCTC-3'. cDNA library screening was performed according to standard protocols (22) .

Nucleic acid sequencing and sequence analysis
Inserts from positive {lambda}gt11 clones were subcloned in pUC18 plasmid vector (New England Biolabs, Beverly, Mass.) and the inserts from positive Uni-ZAP murine cDNA library phages were excised to plasmid using the protocol recommended by the supplier. Nucleic acid sequencing was performed in an ABI Prism 377 automatic DNA sequencer. Nucleic acid and translated amino acid sequences were analyzed using Gene Works (Intelligenetics, Oxford, U.K.) and Megalign (DNA STAR, Madison, Wis.) software. The GeneBank and EMBL nucleic acid databases were searched using the FASTA and TFASTA programs (23) .

Northern blot analysis
For human STAG3 tissue expression, Human II Multiple Tissue Northern membrane (Clontech) was hybridized with the PCR HSTAG3–1/2 fragment. For murine expression, total RNA was isolated from different mouse tissues with Tri-reagent (Sigma, St. Louis, Mo.) following the manufacturer’s instructions. Approximately 20 µg of RNA was separated electrophoretically in each lane of a 0.8% agarose gel in the presence of formaldehyde and blotted onto a nylon membrane, which was hybridized with the murine PCR mStag3–1/2 fragment. Membranes were stained to confirm equal RNA loading in each lane (not shown). Northern hybridizations were performed at 65°C using RapydHyb (Amersham, Aylesbury, U.K.), and the membranes were exposed to X-ray film at -80°C with an intensifying screen.

STAG3 antibody production
Using PCR, we amplified a 411 bp fragment of the human STAG3 cDNA sequence that codes for a 137 amino acid polypeptide from the central region of the human STAG3 sequence (Fig. 2) . The primers used for the amplification were NSTAG3–1, 5'-GCTCATATGCTGGAGCTGTTCCTGCA-3' and NSTAG3–2, 5'-GCTGTCGACTTATAGTGTCCAGAGAATGGA-3'. Primers introduced ATG initiation and TAA stop codons as well as NdeI-SalI sites (in boldface), which were used to clone the fragment in the pET12a Escherichia coli expression vector (Novagen, Abingdon, U.K.). Sequencing confirmed the correct peptide coded sequence. The STAG3 polypeptide band expressed in E. coli was excised and extracted from a preparative gel and used to immunize New Zealand rabbits with injections of 250 µg of recombinant STAG3 peptide in PBS emulsified in complete Freund’s adjuvant. Booster injections were administered 3 wk later. Antisera were affinity purified using the hSTAG3 polypeptide antigen (24) .



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Figure 2. Alignment of human stromalin amino acid sequences. Amino acids conserved in the three proteins are boxed. The conserved mammalian region is shaded in red and the stromalin conservative domain (SCD) in yellow. The sequence of the E. coli-expressed human STAG3 fragment used to generate polyclonal anti-STAG3 HS403 antiserum is underlined. STAG3 similarity with STAG1 and STAG2 is ~45%.

Immunofluorescence location of STAG3
Testis cells from 7- to 8-wk-old male mice were prepared and fixed for 20 min at -20°C in methanol, rinsed with PBS at room temperature, and incubated with 5% goat serum (Life Technologies, Inc.-BRL, Gaithersburg, Md.). They were then incubated with primary antibodies diluted in 5% goat serum/PBS, followed by two washes in PBS. Cells were incubated 1 h with secondary antibodies in 5% goat serum/PBS, 5 min in 0.8 µg/ml Hoechst 33258 (Molecular Probes, Eugene, Oreg.) in PBS, and washed twice in PBS before mounting in 0.1% p-phenylenediamine dihydrochloride (Sigma), 90% glycerol, 0.1% NaN3 in PBS. Samples were analyzed under a Leitz DMIRB epifluorescence microscope and a Leica TCSNT confocal laser scanning microscope. Images were noise-filtered, corrected for background, and processed using Adobe Photoshop (San Jose, Calif.). Monkey testis slides (The Binding Site, Birmingham, U.K.) were stained as above, increasing the goat serum concentration to 10%. TO-PRO-3 iodide (1 µM, Molecular Probes) was used for DNA staining and captured with a confocal laser scanning microscope.

Accession numbers
The human and murine STAG3 nucleotide sequences have been deposited in the EMBL database with accession numbers AJ007798 and AJ005678, respectively.


   RESULTS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Cloning and expression pattern of human and murine STAG3
In both mice and humans, we recently described the stromalins STAG1 and STAG2, members of a new family of proteins that display two important structural features: the SCD, an 86 amino acid region highly conserved from yeast to humans, unrelated to any other known protein; and the least-conserved regions of the molecules involving the amino and carboxyl termini, which contain basic and acidic domains (7) . We have now derived a 140 bp fragment from a human EST (EMBL Acc. No. Z45306) and a 477 bp fragment from murine EST (GenBank Acc. No. AA097991) homologous to STAG1 and STAG2, which were used to screen human and mouse testis cDNA libraries, respectively. After several screening rounds, we retrieved and characterized cDNA encoding human and murine STAG3; the ORF deduced from the respective cDNA sequences are shown in Fig. 1 . PROSITE analysis of these sequences indicates the methionine residues (Fig. 1 , arrowhead) as the probable initial residues of the STAG3 proteins. The degree of identity between human and murine STAG3 proteins is ~75%, lower than that between the other human and murine stromalins, h/mSTAG1 (99%) and h/m STAG2 (99%). The main divergence is found at the amino- and carboxyl termini of the proteins. Both STAG3 proteins have a carboxyl-terminal acidic domain; like STAG1 and STAG2, STAG3 proteins have no domains homologous to other proteins outside the stromalin family. Sequence analysis of the three human stromalins shows two highly conserved domains (Fig. 2 ). The first is the region from Ile204 to Thr231 in human STAG1, which is identical in all mammalian stromalins (Fig. 2) ; the second region extends from Phe296 to Met381 in the human STAG1 sequence (Fig. 2) . This latter region is conserved not only in mammalian stromalins, but in all family members including the yeast stromalin-like proteins; it has therefore been named the stromalin conservative domain, or SCD (C. Carreiro et al., unpublished results).



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Figure 1. Predicted open reading frames of human and mouse STAG3. Putative initial methionine residues are marked by an arrowhead. Conserved amino acids are shaded in gray. The acidic carboxyl-terminal amino acid domain is underlined.

Northern blot hybridization using a STAG3-specific probe shows expression of a specific RNA band of ~4.5 kb in human testis (Fig. 3A ); a similar testis-specific band was found in mouse (Fig. 3B ). Prior screening of human fetal brain and thymus cDNA libraries with the same probe yielded positive phages in which the sequence of the inserts always contained exons and unprocessed introns of STAG3 gene. Similar results were obtained when we performed reverse transcriptase (RT) -PCR on human fetal brain and thymus cDNA. Preliminary analyses of the human STAG3 downstream genomic sequence indicate that there is a new human gene in the 3' region of STAG3 that partially overlaps STAG3, which is transcribed in the opposite direction (unpublished results). We therefore consider that the cDNA fragments obtained by screening commercial libraries and RT PCR on tissues other than testis may have been derived from this new transcript. These results suggest that, in contrast to STAG1 and STAG2, the STAG3 mRNA sequence is expressed only in testis. The murine STAG3 expression pattern was more precisely characterized during male germ cell development. Northern blot analysis indicates that STAG3 mRNA is expressed mainly in germ cells undergoing the first meiotic division, with maximum expression at 18 to 20 days postpartum (pp), and is undetectable before day 14 pp (Fig. 3C ). Pachytene cells appear in mouse testes on day 12–14 pp and increase rapidly from days 16–20 pp (25) , the period of maximum STAG3 mRNA expression.



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Figure 3. Specific STAG3 expression detected by Northern blot. Adult human and mouse mRNA membranes hybridized with their respective probes and exposed for 48 h (A, B). Northern blot analysis of mouse mRNA isolated from testes 2 to 20 days postnatally and adult. The membrane was probed with the same STAG3 cDNA mouse fragment (C).

Immunofluorescence location of STAG3
To correlate specific STAG3 transcription in testis with STAG3 protein expression in germline cells during spermatogenesis, we examined seminiferous tubule cross sections by immunofluorescence. The meiotic process occurs in an orderly fashion within the seminiferous tubules, with spermatogonia situated peripherically near the basal region of tubules, whereas maturing germ cells move gradually inward until elongating spermatids are released into the lumen. This spatial arrangement and the morphological features of distinct meiotic stages allow us to trace STAG3 expression throughout the differentiation process. A rabbit antibody against a human STAG3 fragment (hSTAG3 ORF amino acids 626 to 757) expressed in E. coli (Fig. 2) was applied to paraformaldehyde-fixed sections of monkey testes (Fig. 4 ). As a reference, centromeres were visualized using a human autoimmune serum (26) . Preimmune serum gave no signal (Fig. 4B ). STAG3 was undetectable in Leydig cells, Sertoli cells, and spermatogonia. Preleptotene cells were also negative. Zygotene cells, with most centromeres paired, showed high STAG3 expression levels (Fig. 4A ). In pachytene cells, in which homologue chromosomes are fully synapsed and centromere signals are fused, STAG3 signals were less intensive and concentrated on bivalent chromosomes in a structure compatible with the SC (Fig. 4C , D ). Finally, after the first meiotic division, all subsequently generated haploid cells were negative for STAG3 staining. The STAG3 expression pattern, specifically on bivalent chromosomes, therefore conforms well with its involvement in chromosome synapsis during meiotic prophase I.



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Figure 4. Location of STAG3 in monkey testis sections. Immunofluorescence analysis of seminiferous tubules from monkey testis by triple staining, using TO-PRO-3 for DNA (blue), anti-centromere antibody (red), and anti-STAG3 HS403 antibody (green) (A) or with DNA and anti-centromere staining as in panel A, with PS403 preimmune serum (green) (B). Magnification of a region of seminiferous tubules: double anti-centromere and anti-STAG3 antibody staining (C) or triple as in panel C plus DNA staining (D), triple as in panel D with PS403 preimmune serum (E).

To study the presence of STAG3 in the SC, we analyzed colocalization of STAG3 and of a protein immunologically related to MAP1B, associated with the SC (27) . Adult mouse spermatocytes were studied in immunofluorescence confocal microscopy. The 3-dimensional reconstruction of a pachytene cell stained with anti-STAG3 and anti-centromere antibodies shows autosomes and XY bivalents (Fig. 5A ) and the presence of STAG3 along the length of the bivalent chromosome (Fig. 5A , inset). Figure 5B shows a single optical section of a pachytene cell stained with anti-STAG3 and anti-MAP1B antibodies, indicating discontinuous STAG3 staining that only partially colocalizes with MAP1B, suggesting heterogeneous STAG3 protein distribution along the SC. STAG3 thus shows a spatial-temporal expression, suggesting its participation in the bivalent and chromosome synapsis.



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Figure 5. Location of murine STAG3 in pachytene cells. A) Immunofluorescence analysis of a pachytene spermatocyte isolated from mouse testis stained with anti-STAG3 HS403 (red) and anti-centromere antibodies (green). The inset shows a magnified view of one chromosome amplified twofold with the centromere stained at one end. B) A confocal optical section of murine pachytene spermatocytes after osmotic shock, stained with anti-STAG3 HS403 antiserum (B1), anti-MAP1B mAb (46) (B2), and partial colocalization of both signals (yellow) (B3).

Chromosomal mapping and genomic structure of human STAG3 and STAG3-like genes
Southern blot hybridization with a STAG3 cDNA probe on genomic DNA suggested the existence of several loci with related sequences (unpublished data). In addition, several BAC clones containing STAG3-related sequences were identified in public databases (high throughput genome sequence). The complete genomic structure of the cloned STAG3 gene was characterized by PCR from genomic clones and genomic DNA, using a combination of primers designed from the cDNA sequence. It consists of 34 exons with 33 introns and encompasses more than 30 kb of the genomic DNA, although the size of the large intron 4 is still undetermined (Fig. 6 ). Table 1 shows the intron/exon boundaries and the size of the exons and introns in pairs of bases. Partial sequence analysis of various cDNA and genomic clones, as well as database comparisons, allowed the identification of additional multiple STAG3-related sequences that displayed 90–98% identity. Further characterization revealed that the low copy number repeats correspond to truncated copies of STAG3 (Fig. 6) with a similar degree of homology in exonic and intronic sequences. STAG3 is therefore probably the ancestral gene, and the truncated copies may have originated through genomic duplications. Most STAG3-like (STAG3L) genes are transcribed and processed normally, resulting in messengers of distinct sizes, detected ubiquitously on Northern blots (unpublished data). All cloned STAG3L transcripts initiate with a first exon with homology to the first exon of JTV1, a gene overlapping the PMS2 gene and transcribed from the opposite strand on chromosome 7p22 (28) . These JTV1-related exons contain a 24mer repeat that is variable among the different STAG3L genes. There is no additional homology between the remainder of the JTV1 cDNA or genomic sequences and the STAG3L genes. As with the original JTV1, however, all STAG3L genes overlap PMS2-related genes (29) , which are transcribed from the opposite strand. The longest ORF of STAG3L1, STAG3L2 and STAG3L3 cDNAs predict the generation of identical 134 amino acid proteins, which share 85% similarity to the middle part of STAG3, including the entire SCD. STAG3L4 and STAG3L5 has a very short potential ORF, and STAG3L6 cDNA contains an ORF predicting a 150 amino acid protein with 85% identity to the STAG3 amino-terminal region that includes the mammalian consensus sequence. It is not known whether any of these transcripts actually encodes a functional protein.



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Figure 6. Genomic structure of human STAG3 and STAG3-like genes. A) Genomic structure of the ancestral human STAG3 gene composed of 34 exons and located in 7q22. Exon and intron sizes are drawn approximately to scale, except for the large intron 4 of unknown size. The STAG3 gene is the precursor of a family of truncated genes, all on chromosome 7. B) Truncated STAG3-related loci located on the genomic duplications that flank the Williams syndrome (WBS) deleted region (19) . D7S489C, D7S489A, and another D7S489C are polymorphic dinucleotide polymorphisms flanked by AluI repeats (hatched boxes) that form part of STAG3L1, STAG3L2, and STAG3L3 cDNAs, respectively. D7S489A and the centromeric D7S489C have previously been mapped near the WBS deletion breakpoints (15) . C) Truncated STAG3-related loci in 7q22. D) STAG3L6 cDNA splices out exon 6 and contains a STAG3-unrelated last exon (hatched box). STAG3L5 was found in a sequenced BAC clone, but no specific transcript has been identified. Open arrows represent putative initiation codons in every gene and filled arrows indicate in-frame stop codons. STAG3L exons with high similarity to STAG3 are numbered according to their position in the ancestral STAG3 gene. JTV1-related exons (JTV1RE) are the first exons in all transcribed STAG3-related genes found. JTV1REs show high sequence homology to the first exon of the JTV1 gene on 7p22 (24) , are surrounded by CpG islands, and contain a 24mer element repeated a number of times that differs in the various loci, as indicated. These exons are also transcribed in the opposite direction, generating different PMS2-related genes (25) . Partial sequences of all STAG3-like cDNAs except STAG3L5 were identified by screening of a human fetal brain cDNA library, and could be also identified from the EST data base.


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Table 1. Exon/intron organization of human STAG3 gene

PCR screening of DNA from a human/rodent somatic hybrid cell panel (Coriell repositories) using primers from several STAG3 regions produced the expected products in a single hybrid containing human chromosome 7, indicating that all related loci map to chromosome 7. To define the STAG3 gene location within chromosome 7, the Stanford G3 radiation hybrid panel was PCR amplified with STAG3-specific primers designed from the last two exons. Amplification specificity was verified by sequencing. Two-point linkage analysis in the on-line Stanford Human Genome Center server revealed that the STAG3 locus is located on chromosome region 7q22, linked to several markers in the region and near the EPO and CUTL1 genes. Primers for the 24mer repeat in the JTV-related exon used in the same radiation hybrid panel permitted assignment of STAG3L1, STAG3L2, and STAG3L3 (5, 4, and 5 repeats, respectively) to 7q11.23 and of STAG3L4 (2 repeats) and STAG3L5 to 7q22, very close to the ancestral STAG3 gene. STAG3L6 does not contain the sequence of primer STAG3LE1D and was not mapped in the radiation hybrids. No STAG3-like sequences have been identified in the vicinity of the PMS2-JTV1 locus in 7p22. The human genomic BAC clone RG161A02 has been completely sequenced as part of the Human Genome Project and contains the nine last exons of the ancestral STAG3 gene, as well as the entire STAG3L4-like gene. STAG3L5 is located on BAC RG313A17, which also contains the CUTL1 gene. No physical contiguity has been established between STAG3/STAG3L4 and STAG3L5 loci, although they must be very close according to the radiation hybrid data. STAG3L6 is located on BAC NH0166A04, which also contains the dinucleotide repeat locus D7S645 that has been assigned to 7q11.22. STAG3L1, STAG3L2, and STAG3L3 are located on large genomic blocks of low copy repeat elements that flank the region commonly deleted in WBS, which include the GTF2I (19) and NCF1 loci (middle blocks) as well as the respective pseudogenes GTF2IP1 and NCF1P1 (centromeric blocks), GTF2IP2, and NCF1P2 (telomeric blocks) (19 , 30) . STAG3L1 and STAG3L2 contain the polymorphic loci D7S489C and A, respectively, which have previously been mapped close to the WBS deletion breakpoints immediately outside the deleted interval (15) .

Mapping of the murine Stag3 gene
An AluI PCRFLP in the 3'UTR was identified between the Mus musculus C57BL/6J strain and M. spretus. By typing 50 random samples from the F2 progeny of the EUCIB backcross panel, the Stag3 locus was assigned to mouse chromosome 5 at cM 67 (Fig. 7 ). This region harbors other polymorphic markers and genes such as Epo and Pcolce, thus extending the region of conserved synteny between mouse distal chromosome 5 and human 7q22 (Fig. 7) . In contrast to humans, the Stag3 gene appears to be encoded by a single locus in the mouse. This further supports the hypothesis that STAG3 is the ancestral gene, given its evolutionarily conserved functions and its orthologous map location relative to the unique mouse Stag3 gene. Recent evolutionary genomic duplications have thus led to a family of adjacent (7q22) and relatively dispersed (7q11.22/7q11.23) truncated copies of the ancestral gene in humans.



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Figure 7. Mapping of the mouse Stag3 locus. A) PCRFLP between the two parental strains of the EUCIB backcross, B (C57BL/6J), and S (Mus spretus), after AluI digestion. B/S represent two heterozygous individuals from the progeny. B) Mapping of the mouse Stag3 locus among other polymorphic loci at cM 67 in distal chromosome 5 in a region of conserved synteny with human chromosome 7q22. The Gtf2i and Tbl2 loci, orthologous to genes deleted in WBS, had previously been mapped at cM 64 in the same backcross, implying that this region is syntenic to human chromosome 7q11.23 (L. A. Pérez Jurado et al., in press).


   DISCUSSION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
The perception of SC has altered radically in recent years, from an inactive concept to a dynamic structure in which proteins such as SCP1 (31) and SCP3 (32) are components of the structural support of SC, whereas other proteins and protein complexes associate and dissociate throughout the formation and maintenance of pairing, recombination, and repair. Studies of mice deficient in different DNA mismatch repair genes—PMS2 (33) , MLH-1 (34) , and MSH5 (35) —showed that these genes are involved in the progression of meiosis I, but they presented different phenotypes, indicating independent functions in mammalian meiosis. The human Rad51 protein has a role in interhomologue interactions and is a component of the early, but not late, recombination nodules during meiotic recombination; it is abundant in zygotene and greatly diminished in pachytene (36) .

Given its expression pattern, it appears that STAG3 is a meiosis-specific member of the highly conserved family of stromalin nuclear proteins. The S. cerevisiae stromalin homologue has recently been characterized as a subunit of the cohesin complex in yeast, and has been renamed Scc3p (10) . Cohesin complexes in yeast and Xenopus are reported to be necessary for sister chromatid cohesion during mitosis. In yeast, the cohesin complex mediates cohesion until the metaphase-anaphase transition (10) , whereas in vertebrates ~95% of the cohesin subunits dissociate from chromatin at the onset of mitosis (37) . Based on amino acid similarity between Scc3p and the stromalins STAG1 and STAG2 (7 , 10) and on the expression pattern of these two mammalian proteins, we suggested that the role of STAG1 and STAG2 in the mammalian cell cycle is similar to that of Scc3p (C. Carreiro et al., unpublished results). The degree of sequence identity between STAG3 and STAG1/STAG2, as well as our results on STAG3 expression throughout meiosis, are compatible with a model in which STAG3 is involved in chromosome cohesion in zygotene, different from cohesion between sister chromatids in the mitotic chromosome; it also participates in this cohesion in chromosome synapsis in pachytene.

In addition to the previously mentioned mismatch repair genes, an autosomal recessive mutation, morc, has recently been described. This mutation results in spermatogenesis arrest early in meiosis prophase I in mouse, generating specific male infertility (38) . In humans, infertility is a common clinical problem, affecting ~10% of couples. It has a significant familial component, with autosomal recessive inheritance estimated for half of male cases (39) . Due to the complex regulation of germ cell line maturation, many genes are likely to be involved in human infertility. The DAZ (deleted in azoospermia) gene on the long arm of the human Y chromosome has been identified as a strong candidate for the azoospermia factor (AZF) (40) . Its role in spermatogenesis is supported by its exclusive expression in testis, its deletion in a large percentage of males with azoospermia or severe oligospermia, and its homology with a Drosophila male infertility gene boule. Several forms are known in which a deficiency in synapsis during meiosis is evidenced by a deficiency of chiasmas in meiotic preparations from the testis (oligosynapsis infertility, OMIM #258150) (41) . The only autosomal locus proposed as a candidate for autosomal recessive male infertility is that encoding DAZLA (DAZ-like autosomal) (42) .

In a family with probable autosomal recessive inheritance, 3 azoospermatic brothers out of 13 sibs from a consanguineous marriage were found to have a unique pattern of testicular histology, with arrest of spermatogenesis at the pachytene stage of primary spermatocytes and an otherwise normal phenotype (43) . Based on the specific expression pattern and predicted function of STAG3, it is a good candidate for genetic forms of male infertility in which spermatogenesis arrest at the first spermatocyte level is the principal feature.

We characterized the STAG3-derived low copy number repeat elements in the vicinity of the breakpoint hotspots that cause WBS deletions at chromosome band 7q11.23, as well as in 7q11.22 and chromosome band 7q22. The regions 7q11.23 and 7q22 are involved in germline and somatic cytogenetic aberrations with relatively high frequency (44 , 45) , and there is little data addressing the mechanisms of these rearrangements. WBS is a haploinsufficiency disorder with multi-system manifestations and sporadic occurrence in the majority of cases, indicating a very high mutation rate, close to 5 x 10-5 per gamete/generation. Most WBS deletions arise as a consequence of unequal meiotic crossover events (17) . The fact that deletion breakpoints in WBS patients appear to cluster in genomic regions that are part of a duplication and close to STAG3L copies indicates that unequal recombination occurs in a very precise manner in multiple unrelated WBS chromosomes, and further supports the concept of a common mechanism for the deletions. Since STAG3 may be implicated in some of the mechanisms of meiotic recombination that include reciprocal breakage, exchange of DNA segments, and rejoining of chromatids, it is intriguing to find STAG3-related genes located in genomic regions involved in frequent, precise rearrangements. It is thus tempting to speculate that the large duplicated regions flanking the WBS deleted interval, which are a hotspot for misalignment during meiosis, may also serve as Z-elements or affect local chromatin structure and mediate some of the unequal crossover events that cause the WBS deletions.


   ACKNOWLEDGMENTS
 
We would like to thank Drs. S. O’Brien and S. Rodríguez de Córdoba for critical reading of the manuscript, J. P. Albar and L. Gómez for anti-STAG3 polyclonal antibody generation, J. Avila for the gift of the anti-MAP1B mAb, M. Aracil for help with mouse tissue preparation, A. Martínez and T. Escolar for excellent technical help, R. Villares, J. M. Buesa, C. Carreiro, I. Barthelemy, and A. Valdelolmillos for helpful discussions during the experimental work, and C. Mark for editorial assistance. This work was supported by grants from the Spanish Fondo de Investigaciones, from the Communidad de Madrid (L.A.P.J. and C.V.), from the EU, DGCyT and the CAM (J.M.), and from Pharmacia & Upjohn. The Department of Immunology and Oncology was founded and is supported by the Spanish Research Council and Pharmacia & Upjohn.


   FOOTNOTES
 
Received for publication June 1, 1999. Revised for publication October 25, 1999.


   REFERENCES
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
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