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(The FASEB Journal. 2000;14:1529-1538.)
© 2000 FASEB

Cell-penetrating SH3 domain blocker peptides inhibit proliferation of primary blast cells from CML patients

CHRISTIAN KARDINAL*, BIRGIT KONKOL*,{dagger}, AXEL SCHULZ{ddagger}, GUIDO POSERN*, HUI LIN§, KNUT ADERMANN{ddagger}, MANFRED EULITZ{dagger}, ZEEV ESTROV§, MOSHE TALPAZ§, RALPH B. ARLINGHAUS§ and STEPHAN M. FELLER*1

* Laboratory of Molecular Oncology, MSZ, Universität Würzburg, Germany;
{dagger} Klinische Molekularbiologie und Tumorgenetik, GSF, Munich, Germany;
{ddagger} IPF, Hannover, Germany; and
§ M. D. Anderson Cancer Center, Houston, Texas 77030, USA

1Correspondence: Laboratory of Molecular Oncology, MSZ, Versbacher Str. 5, D-97078 Würzburg, Germany. E-mail stephan.feller{at}mail.uni-wuerzburg.de


   ABSTRACT
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Bcr-Abl contributes prominently to the development of most chronic myeloid leukemias (CMLs). Prior work has identified the adapter protein CRKL as a major substrate of the Bcr-Abl tyrosine kinase. CRKL can also bind via its first SH3 domain [SH3(1)] to specific sequences in Bcr-Abl. Cell-penetrating peptides were developed that bind with high affinity and selectivity to the SH3(1) domain of CRKL. They disrupt Bcr-Abl–CRKL complexes and strongly reduce the proliferation of primary CML blast cells and cell lines established from Bcr-Abl-positive patients. Activation-specific antibodies against phosphorylated MAP kinase (MAPK) showed that MAPK activity is down-regulated in blast cells treated with the CRKLSH3(1) blocker peptides. We conclude that the Bcr-Abl–CRKL complexes are largely dependent on the CRKLSH3(1) domain, that the central mitogenic cascade is down-regulated as a consequence of the disruption of CRKLSH3(1) interactions, and that CRKL therefore contributes to the proliferation of CML blast cells.—Kardinal, C., Konkol, B., Schulz, A., Posern, G., Lin, H., Adermann, K., Eulitz, M., Estrov, Z., Talpaz, M., Arlinghaus, R. B., Feller, S. M. Cell-penetrating SH3 domain blocker peptides inhibit proliferation of primary blast cells from CML patients.


Key Words: CRKL • adapter protein • Bcr-Abl • MAP kinase (MAPK)


   INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
BCR-ABL PROTEINS RESULT from chromosomal translocations, which usually involve the human chromosomes 9 and 22 (reviewed in refs 1 2 3 4 ). They are found in over 90% of human chronic myeloid leukemias. Previous work has shown that the tyrosine kinase activity of Bcr-Abl is greatly elevated compared to c-Abl and that this elevation directly correlates with the transformation potency of Bcr-Abl (5) . Bcr-Abl expression in cells affects a plethora of signal transduction pathways, including the Ras-MAP kinase (MAPK) cascade, JNK/SAPK family kinases, and PI3 kinase (1 2 3 4 , 6) . Despite this wealth of data, it has been difficult to distinguish primary signaling events set off by Bcr-Abl from secondary and tertiary effects and to determine essential signaling cascades that are truly specific for Bcr-Abl. Hints for possible candidates of Bcr-Abl signaling initiators have come from the identification of Bcr-Abl substrates like CRKL, Paxillin, and c-Cbl as well as proteins that can bind to Bcr-Abl, including again CRKL and c-Cbl, but also adapter proteins like Grb2, SHC, and others (2 , 4 , 6) .

CRKL was discovered as a gene near one of the chromosomal breakpoints evident in Bcr-Abl-expressing cells and as a prominent tyrosine-phosphorylated protein in human chronic myeloid leukemia (CML) cells (2 , 6) . From its sequence, it was obvious that CRKL is an adapter protein and shares high homology with the previously discovered Crk adapter proteins. Besides a great sequence similarity of the SH2 and SH3 domains, a homologous region exists in c-Crk-II and CRKL around a tyrosine between the SH3 domains (6) . This tyrosine is phosphorylated by Bcr-Abl and is assumed to play a role in the regulation of protein conformation in c-Crk-II and CRKL.

Of the two SH3 domains found in c-Crk-II and CRKL, only the first ones [SH3(1)] have been documented to function as mediators of highly selective protein–protein interactions. The SH3(1) domains of c-Crk-II and CRKL bind with high affinity to certain proline-rich sequences that conform to the consensus P-x-x-P-x-K (6 , 7) . A high-resolution crystal structure revealed that the lysine following in position + 2 of the SH3 typical P-x-x-P motif is crucial for high binding affinity and selectivity (8) . Mutational analyses of naturally occurring binding motifs indicated that residues outside the consensus motif also influence the binding affinity of these sequences (7 , 9) . In general, SH3 binding affinities of short synthetic peptides corresponding to naturally occurring sequences are in the micromolar range. In a previous study we generated chimeric peptides that bind with nanomolar affinities to the SH3(1) domains of Crk and CRKL (9) . This study also showed that the high-affinity Crk/CRKLSH3(1) binding peptides (HACBPs) have a unique selectivity for Crk/CRKL when compared to thousands of cellular proteins from lysates of metabolically labeled K562 (CML blast) cells. This remarkable degree of HACBP binding selectivity is an important prerequisite for reliable results when these peptides are used for studies with living cells or for future in vivo studies with animals.

In the current study we attempted to determine whether the SH3(1)-mediated binding of CRKL to Bcr-Abl is important for the function of this leukemic oncogene. Thus, shuttle tags that allow a rapid, receptor-independent uptake of peptides into cells were attached to the HACBPs. Furthermore, affinities of the HACBPs were again improved. The newly developed HACBPs are capable of disrupting Bcr-Abl–CRKL complexes in CML cells, resulting in a decreased MAP kinase activity and a strong reduction of proliferation.


   MATERIALS AND METHODS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Peptide synthesis
Synthesis was carried out by the Fmoc (fluorenylmethoxycarbonyl)/t-butyl-based solid-phase peptide chemistry method on SMPS 350 (Zinsser Analytic, Frankfurt/Main, Germany) and ABI 433A (Perkin Elmer, Norwalk, Conn.) synthesizers. The peptides were deprotected and cleaved from the resin with trifluoroacetic acid/ethanedithiol/water, 94:3:3, for 120 min. After filtration, precipitation with cold ter-butyl methyl ether, and lyophilization, the crude peptides were purified by reverse-phase high performance liquid chromatography (HPLC) on preparative Vydac C18 columns with linear gradients of 80% acetonitrile plus 0.05% trifluoroacetic acid vs. 0.07% aqueous trifluoroacetic acid. Correct mass was checked by electrospray mass spectrometry (Sciex API III, Perkin Elmer). Pure fractions were pooled and the final product was analyzed by reverse-phase HPLC on a Vydac C18 column (250x4.6 mm) and capillary zone electrophoresis (Biofocus 3000, Bio-Rad, Richmond, Calif.). Disulfide-containing peptides were generated by a modified large-scale coupling procedure (9a). Biotinylation of peptides was previously described (9) .

Fluorescence spectrometry
Measurement of binding affinities based on the interaction of the peptides with aromatic residues (predominantly tryptophan) in the SH3 domains was done as described (9) on a LS50B spectrometer (Perkin Elmer) with a water-cooled cuvette chamber.

We were unable to obtain usable results with the Trp-containing peptides due to the high background fluorescence of the peptides. These peptides were therefore characterized by other assays (details below). The disulfide bond-containing peptides (see Table 1B ) could be measured only prior to coupling to the Trp-containing Antp sequence.


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Table 1B. Sequences and SH3 affinity measurements with Trp fluorescence of peptides used in this studya

Cell culture and protein complex formation inhibition
Human Bcr-Abl(p210)-positive CML cells K562 (ATCC, Rockville, Md.) and BV173 and human AML cells KG-1a (gifts of S. Frühauf, University Heidelberg) were cultured in RPMI1640 with 5% fetal bovine serum (FBS). B15 cells (Bcr-Abl-positive human acute lymphoblastic leukemia; ref 10 ) were supplemented with 15% FBS. Daudi and Raji (Burkitt’s lymphoma), HL60 (promyelocytic leukemia), and Ba/F3 (mouse pre-B) cells were cultured with 10% FBS. Ba/F3 cells were also supplemented with interleukin 3-containing conditioned WEHI-3 medium. For serum deprivation, K562 cells were washed three times with serum-free medium and then cultured for 3 days. Cell lysis was previously described (9) . PC12 pheochromocytoma cells were cultured in DMEM with 5% FBS and 3% horse serum and antibiotics.

In vitro inhibition of CRKL complexes by Antennapedia- and integrin peptides (nomenclature in Table 1B ) in Fig. 1A was carried out with total cell lysates. Twenty micrograms of GST-tagged HACBP fusion peptide (9) was preincubated for 2 h at 4°C in 500 µl IP buffer containing 2% ovalbumin and protease inhibitors (9) , Escherichia coli protein extract (1 mg; ref 9 ), and glutathione-Sepharose beads. K562 protein (1 mg) and the different peptides (30 µM) were then added and incubated overnight. Precipitates were washed three times with RIPA buffer (9) . After sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and blotting, CRKL bound to GST-HACBP fusion peptide was detected with anti-CRKL (Santa Cruz, sc-319, Santa Cruz, Calif.) and 25 µCi 35S-protein A (Amersham Pharmacia, Little Chalfont, U.K.).



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Figure 1. Analysis of affinities and stability of cell-penetrating peptides. A) Comparison of integrin- and Antennapedia shuttle peptides effects on the high-affinity CRKL binding peptide (HACBP)–CRKL SH3(1) interaction. To test the effect of different shuttle peptides on the binding of CRKL to the HACBP sequence, CRKL was precipitated from K562 lysates with a glutathione-Sepharose-immobilized GST-HACBP fusion peptide previously described in detail (9) in the presence of soluble competitor peptides as indicated (for sequences, see Table 1B ). CRKL bound to GST-HACBP was detected by SDS-PAGE and anti-CRKL Western blot. P1 is a control peptide that is made of D-amino acids with a sequence rich in prolines and basic residues without significant binding to CRKL (9) . It was used to evaluate nonspecific peptide effects in the competition assay. B) Stability of Antp-HACBP (P8) in K562 CML blast cells. Cells were incubated with a biotinylated form of P8 at 10 µM for the time indicated. Cell lysates and culture supernatants were then analyzed for remaining peptide by SDS-PAGE, blotting, and detection of biotinylated peptide with streptavidin-peroxidase and ECL. Open arrowheads indicate the full-length peptide, closed arrowheads point to peptide fragments.

In vitro inhibition of Grb2–SoS complex formation was done similarly: K562 protein (200 µg) and the different peptides (10 µM) were mixed; 25 µg of GST-Grb2 (9) immobilized on glutathione-Sepharose in the presence of 500 µg E. coli protein extract was then added and the samples were incubated overnight. Precipitates were washed three times with RIPA buffer (9) , separated by SDS-PAGE, blotted, and probed with SoS-antiserum (Upstate Biotechnology Inc., #06–246, Lake Placid, N.Y.).

For inhibition assays with living cells in Fig. 3 , the K562 cells were washed and resuspended in medium supplemented with DNase I (20 µg/ml; Sigma, D4513, St. Louis, Mo.). Cells were seeded into 24-well plates at a density of 1 x 105 per 0.2 ml and incubated for 30 min at 37°C. Thereafter, the peptide solution that had been mixed with 0.2 ml of medium was slowly added to the cells. On the next day cells were again treated with DNase I and peptide. Evaluation on day 3 was done by counting the viable cells after staining with trypan blue dye. Activity of MAP kinase was evaluated with activation-specific anti-phosphoMAPK (New England Biolabs, #9101, Beverly, Mass.) following the manufacturer’s instructions.



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Figure 3. Proliferation inhibition of Bcr-Abl-positive K562 cells but not Bcr-Abl-negative hematopoietic cells through HACBPs. A) The number of control cells without peptide addition on day 3 was set to 100% proliferation. Only viable cells were counted. Triplicates for each data point were done per experiment. Three or four independent experiments were performed in each case. B) Comparison of HACBP and control peptide effects on Bcr-Abl negative cell lines. Cells were incubated with 200 µM of HACBP (P8) or control peptide (P11) for 3 days. Viable cells were then counted.

Immunofluorescence
PC12 cells were seeded onto glass coverslips. On the next day they were serum-starved for 16 h and treated with DNase and 100 µM of the indicated peptides, as described above, for 5 h. Cells were then rapidly washed twice with cold phosphate-buffered saline (PBS) containing 2 mM Na2EDTA and high salt (500 mM NaCl) and fixed with an ice-cold ethanol-acetic acid solution (90/10) for 5 min. After washing with PBS, fixed cells were blocked for 30 min with PBS supplemented with 10% FBS. Cells were then stained with DTAF-streptavidin (Jackson ImmunoResearch, #016–010-084, West Grove, Pa.; 1:200 diluted in block buffer) and analyzed by fluorescence microscopy. Cells without peptide addition were photographed for the same length of time as peptide-treated cells to detect nonspecific background fluorescence of DTAF-streptavidin.

Peptide stability assays
Evaluation of Bio-Antp-HACBP half-life in K562 cells was done by peptide addition as described above. At indicated time points, cells were washed with cold PBS and then lysed with RIPA buffer. Biotinylated peptide was precipitated with streptavidin-agarose. Precipitates were washed three times with RIPA and subjected to SDS-PAGE. 10 µl of culture supernatant was also analyzed. After blotting onto PVDF, peptides were immobilized with 4% glutaraldehyde in PBS for 20 min and detected with horseradish-labeled streptavidin (AmershamPharmacia, RPN1231).

Isolation and peptide treatment of patient CML blast cells
Peripheral blood from CML patients with active disease was diluted with 1 volume of PBS; 10 ml of this diluted blood was layered onto 5 ml of Histopaque-1077 (Sigma, #1077–1). A low-density gradient was obtained by centrifugation in a swing-out rotor (400 g, 20 min, 20°C). The low-density cell fraction containing the blasts was aspirated with a Pasteur pipette. Blasts were then washed twice with PBS (2000 g, 10 min, 4°C) and cultured in RPMI1640 with 10% FBS. Cell-penetrating peptides (20 µM) were added as described above for K562 cells.


   RESULTS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
Development of membrane-penetrating SH3 domain blocker peptides
Within the Bcr-Abl oncoprotein, four sequences correspond to the minimal CRKL SH3(1) binding consensus P-x-x-P-x-K (Table 1A) . Furthermore, complexes of Bcr-Abl and CRKL are detectable by coimmunoprecipitation (reviewed in refs 1 , 2 , 4 , 6 ). Molecular details of the Bcr-Abl–CRKL complex formation were not known previously. Besides a CRKLSH3(1)-dependent interaction, binding of the phosphorylated CRKLTyr207 to the SH2 domain of Abl and other binding modes seemed possible.


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Table 1A. Sequences conforming to the minimal binding consensus for CRKL SH3(1)

To test whether complexes between Bcr-Abl and CRKL depend on the SH3(1) domain of CRKL and whether they are functionally important in CML cells, cell-penetrating peptides to selectively disrupt this interaction were generated. Peptides used in the experiments are summarized in Table 1B . The starting point for the experiments was an HACBP generated in a previous study by chimerization of naturally occurring CRKLSH3(1) binding sequences in C3G and SoS1 (9) . This peptide (designated P2; see Table 1B ) displays a unique binding selectivity for the SH3(1) domains of Crk and CRKL.

To use these peptides in living cells, it is necessary to attach an epitope that allows them to enter cells efficiently. Several reports of peptide sequences that perform a receptor-independent cell entry have been published in recent years. The best-characterized ‘shuttle tag’ is the third {alpha}-helix of the Drosophila transcription factor Antennapedia (reviewed in ref 11 ), but sequences from the human ß3-integrin chain (12) , the HIV Tat protein (13) , a synthetic amphipathic helix (14) , and several other sequences have been reported.

To successfully disrupt the constitutive Bcr-Abl–CRKL complexes in CML blast cells, several requirements must be met. The shuttle must be sufficiently stable and cannot be toxic when cells are incubated for extended periods. It should also not interfere with the binding of the ‘cargo’ peptides to the target. Moreover, the shuttle should transport its cargo in significant amounts to the cytoplasm where the Bcr-Abl protein is located.

Three shuttle sequences were tested in our study. Peptides containing the synthetic shuttle sequence described by Oehlke et al. (P3 and P4) were toxic for K562 CML blast cells when the incubation was carried out for 12 h or more (data not shown); therefore, they were not used further. The ß3-integrin shuttle sequence-containing HACBP peptide (P5) showed a significantly reduced binding to the CRKLSH3(1) domain (compare affinities of P2 and P5; also see competition assay in Fig. 1A ) and therefore was not used further.

Finally, peptides coupled to a mutated Antennapedia shuttle (abbreviated Antp) were tested. In this sequence a glutamine essential for DNA binding is mutated to a proline, strongly reducing the DNA binding and preventing an accumulation in the nucleus (Pro50 mutant; 10). As shown in Fig. 1A , Antp-HACBP (P8) displayed no reduced CRKL binding when compared to the HACBP alone (P2) in an in vitro competition assay.

Accumulation of Antp (P7) and Antp-HACBP (P8) in the cytoplasm was confirmed for several cell lines by immunofluorescence using biotinylated peptides and detection with streptavidin-DTAF. In Fig. 2 , representative results are shown for the adherent cell line PC12, where cytoplasm and nucleus are easily recognizable as separate regions, different from most hematopoietic cells. Furthermore, CRKL protein could be precipitated with a biotinylated form of the peptide P8 from cell lysates (not shown).



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Figure 2. Internalization and cytoplasmic accumulation of Antp and Antp-HACBP in PC12 pheochromocytoma cells. PC12 cells were incubated with 100 µM of the biotinylated forms of Antp (P7) or Antp-HACBP (P8) as indicated, washed, and fixed. Internalized biotinylated peptide was detected by immunofluorescence after incubation of the fixed cells with streptavidin-DTAF.

Point mutant peptides were made to distinguish nonspecific toxicity from specific effects resulting from the HACBP binding to CRKL. Mutants were initially analyzed in vitro by fluorescence measurements and competition assays (Fig. 1A ). While mutation of a crucial proline or lysine residue results in a marked drop in affinity for CRKL (7 8 9) , all single point mutant peptides tested retained a significant residual binding activity (data not shown).

Thus, for the longest HACBP with the highest affinity (P14; Kd=35 nM), a 4-site mutant control peptide (P15) was synthesized. This mutant peptide was void of any detectable residual binding (Table 1B) . The affinity measurements of peptides toward the SH3 domains by tryptophan fluorescence had to be carried out in the absence of the Antp shuttle peptide since this contains tryptophans, resulting in a very high background fluorescence of the peptide.

Determination of peptide stabilities in cultured cells
To analyze the degradation of biotinylated Antp-HACPB (P8) in living cells, a single 10 µM peptide dose was added to K562 cells for up to 48 h (Fig. 1B ). This continuous Antp-HACBP molecule (without a disulfide bond between shuttle and cargo) is expected to shuttle persistently back and forth between culture medium and cellular interior until it is bound or degraded. At indicated times, aliquots of medium and cells were frozen in SDS-PAGE sample buffer. Samples were analyzed for remaining peptides and fragments by SDS-PAGE and detection with streptavidin-peroxidase/ECL. Within the lysates, peptide remains detectable until 36 h, with a half-life of ~12 h. Significant degradation of peptide in the K562 culture medium is visible after 6 h (fragments indicated by filled arrowheads). These fragments were not detected in the lysate, indicating that they do not enter cells efficiently. Serum protease activity clearly accounted for a prominent portion of the extracellular degradation, according to our experiments with cell-free medium containing different concentrations of fetal bovine serum (unpublished data). Based on these results, a protocol with a once daily application of new peptide was chosen for the subsequent studies with K562 cells.

Analysis of peptide effects on cell proliferation
From several previous studies, it is known that Bcr-Abl and CRKL exist in a constitutive complex. The blocker peptides thus are only expected to work on complexes that spontaneously disassemble and on complexes that are newly formed due to protein turnover and cell proliferation. Taking this into account, K562 cells were maintained in the presence of Antp-HACBP (P8), Antp alone (P7), or mutant control peptide (P11) for 48 h, allowing several rounds of cell division. Without HACBP addition, the total number of cells increased ~ninefold under the conditions used (from 1x105 to 9x105 cells/well). Cell proliferation was monitored by counting viable cells. Antp shuttle alone and mutant peptide showed little inhibition of cell growth up to a concentration of 200 µM. By contrast, Antp-HACBP (P8) induced a highly reproducible partial growth inhibition (Fig. 3A ). We did not see signs of an increased apoptosis based on cell morphology (membrane blebbing, cell fragmentation; data not shown).

Since Antp-HACBP is degraded within the K562 cells after ~48 h, the block of cellular proliferation should be reversible if there is not some sort of ‘poisoning’ leading to a permanent growth arrest. This recovery of the proliferation was indeed observed on prolonged cultivation without new peptide.

To further exclude nonspecific effects of the peptides on cell growth, the Bcr-Abl negative cell lines Ba/F3, HL60, KG-1a, Daudi and Raji cells were tested. No significant difference in proliferation was seen with Antp-HACBP (P8) or the control peptide (P11) (Fig. 3B ).

At this stage, we were not satisfied with the concentration of SH3 blocker peptide required for a partial inhibitory effect on proliferation. To make the peptides more potent, two strategies were tested. First, peptides with a disulfide bond instead of a peptide bond between shuttle and cargo were synthesized. The disulfide bond is expected to open up under the reducing conditions inside of cells, allowing the shuttle peptide to exit the cell but trapping the cargo peptide within the cell. Therefore, an intracellular accumulation of peptide beyond the extracellular concentration is expected. Second, HACBP was stepwise elongated to increase the potential binding surface with the SH3 domain.

As shown in Fig. 3A , introduction of a disulfide bond dramatically increased the potency of the Antp-HACBP (compare peptides P8 and P12), arguing for a release of the cargo peptide in the cells and thus the desired intracellular accumulation. Furthermore, peptide affinities in vitro (see Table 1B ) and activity in cultured cells (Fig. 3A , P12 to P14) were further increased by stepwise elongation of the flanking regions surrounding the core motif contained in P2. The flanking sequences were derived from the regions next to the ‘CB1’ motif in C3G (15) . The rationale behind this choice was that sequences from a naturally occurring Crk and CRKL binding protein should be less likely to cause nonspecific toxicity in cells and should not negatively interfere with the core sequence. Elongation of the SH3 binding peptide from 11 amino acids to 28 amino acids resulted in a fourfold higher in vitro affinity as determined by tryptophan fluorescence measurement (Table 1B ; compare peptides P2 and P13, P14) and a significant increase in antiproliferative potency (Fig. 3A ). This suggests to us that affinities may be improved even further by enlargement of the peptide binding surface for the SH3 domain and continuing optimization of the peptide sequence.

The disulfide bond-containing 4-site mutant control peptide (P15) did not display significant nonspecific toxicity. Similar inhibition results for P14 and P15 to those obtained with K562 cells were also seen with the Bcr-Abl(p185)-positive cell line B15 (cells described in ref 10 ) and BV173 cells (results not shown).

Molecular events triggered by HACBPs
If the HACBPs function in cells as thought, a significant decrease of Bcr-Abl–CRKL complexes should result. This was demonstrated by incubating K562 cells with the different peptides, followed by the detection of Bcr-Abl–CRKL complexes with coimmunoprecipitation and Western blot (Fig. 4A ).



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Figure 4. Molecular mechanism of HACBP antiproliferative activity. A) Disruption of Bcr–Abl–CRKL complexes by HACBP. Cells were incubated with 5 µM Antp-SS-peptide as indicated for 48 h. Identical amounts of protein extract were analyzed. The same results were obtained with the corresponding continuous peptides lacking the disulfide bridge (P7, P8; data not shown) at 20-fold higher concentration. B) HACBP does not abolish the complex formation between Grb2 and SoS. GST-Grb2 was used to precipitate SoS from K562 cytosolic proteins (S100 fraction) in the presence or absence or 10 µM of the indicated peptides. SoS protein bound to GST-Grb2 after washing was analyzed by SDS-PAGE and anti-SoS Western blot. C) Reduction of phosphoMAP kinases in cells treated with HACBP. Cells were incubated with the Antp peptides as indicated at a concentration of 100 µM for 48 h. Phosphorylation of MAPKs was determined by phosphoMAPK-specific antiserum. D) MAP kinase activities are largely independent of serum in K562 cells. Cells grown without serum for 3 days do not show a reduced content of phosphoMAP kinases.

Control peptide (P15) had no effect on CRKL–Bcr–Abl complexes. A strong reduction of these complexes was seen with Antp-SS-HACBP (P14). Disruption of Bcr-Abl–CRKL complexes was also seen with the continuous Antp-HACBP (P8) at 100 µM (not shown).

Several lines of evidence document that the biological activity of HACBPs does not result from a lack of binding selectivity of HACBPs and therefore a simple ‘spillover’ effect onto the mitogenic cascade Grb2-SoS-Ras-Raf-MEK-MAPK.

The fluorescence measurements summarized in Table 1B show that HACBPs cannot strongly bind to the Grb2SH3(N) in vitro. To confirm this with full-length proteins, SoS was precipitated from K562 extracts using immobilized GST-Grb2 in the presence or absence of HACBP (P14) or 4-point mutant control peptide (P15). As shown in Fig. 4B , complex formation between SoS and Grb2 is not abolished through 10 µM of Antp-SS-HACBP or control peptide, but completely prevented by a mutant peptide with the crucial lysine changed to arginine (Antp-SS-R mut), which switches the binding specificity from Crk/CRKLSH3(1) to the Grb2SH3(N) domain (for details, see refs 7 8 9 ). In addition, coimmunoprecipitation experiments with peptide-treated K562 cells clearly documented that Antp-SS-HACBP does not affect Grb2–SoS complexes, which are efficiently disrupted by the Grb2SH3(N)-specific peptide Antp-SS-Rmut (not shown).

To gain insight into the molecular signals resulting from disruption of Bcr-Abl–CRKL complexes, peptide effects on MAP kinases were investigated. Using activation-specific phosphoMAPK antibodies, it was observed that Antp-HACBP (P11) but not the control peptide (P8) led to a strong reduction of phosphoMAPKs in K562 cells (Fig. 4C ). It was also observed that a complete withdrawal of serum from the K562 culture medium for 3 days barely affected cell proliferation. PhosphoMAPK was not significantly reduced in these totally serum-deprived cells (Fig. 4D ). Therefore, we speculate that Bcr-Abl allows K562 cells to proliferate well with little exogenous growth factors and that adapter proteins like CRKL are used to keep MAPKs in their active forms.

HACBP inhibits proliferation of primary CML blast cells from patients
The results obtained with the human Bcr-Abl-positive CML cell lines raised the question how these peptides affect the growth of CML blast cells from patients. CML is characterized by a considerable genetic heterogeneity during blast crisis that is mirrored by the lineage diversity of circulating blast cells. About one-third of the patients have blasts of lymphoid type whereas the rest have different types of myeloid cells (4) . Blast cells from patients were isolated from peripheral white blood cells by density gradient centrifugation and incubated with 20 µM HACBP (P14) or control peptide (P15) ex vivo. The results are summarized in Table 2 . Of 16 patients tested, cells from 11 patients showed a significant inhibition of proliferation. All of the patients received or had previously received one or more drugs and often represented a relatively late stage of the disease in which additional mutations are likely to exist in a significant number of cases. We conclude that HACBP-type peptides and structurally related molecules may be a novel option to interfere with the proliferation of CML blast cells.


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Table 2. Inhibition of proliferation of cultured blast cells from CML patients by SH3 domain blocker peptidesa


   DISCUSSION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 
The overwhelming body of literature on Bcr-Abl and related leukemias has not yet allowed a good understanding of the molecular mechanisms essential for Bcr-Abl-specific signals and the multistep development of the human disease. At present, CML is a disease with a low cure rate, and it is hoped that signal transduction-based strategies for the treatment of CML may eventually lead to better therapeutic successes (16) . Besides standard CML therapeutics like interferon, which significantly prolong the overall survival of some patients, several substances are currently in clinical trials, including a modified form of interferon (peggylated IFN) and a Bcr-Abl kinase inhibitor compound (CGP 57148B; recently renamed to STI 571), which were also used to treat some of the patients relevant to our study. While such novel therapies are expected to lead to an improved survival for some patients, there is clearly plenty of room for novel therapeutic strategies.

CRKL was shown to be a major substrate for tyrosine phosphorylation by Bcr-Abl in CML cells and to also form stable complexes with the Bcr-Abl oncoprotein (reviewed in refs 2 , 6 ). The functional significance of CRKL in CML was not obvious, however. The data presented here support the idea that CRKL is an important player in aberrant signaling events triggered by Bcr-Abl in CML blast cells. Previous studies have investigated the role of specific binding sites for the CRKLSH3(1) domain on Bcr-Abl by creating Bcr-Abl deletion mutants that abolish at least some of the proline-rich, direct binding sites on Bcr-Abl (17 and references therein). As shown in Table 1A , four potential CRKLSH3(1) binding sites exist in Bcr-Abl, not all of which have been studied yet (17) . Furthermore, the formation of indirect (ternary) complexes between CRKL and Bcr-Abl that depend on the CRKLSH3(1) domain is certainly a possibility (6) . Direct and indirect complexes of CRKL and Bcr-Abl that depend on the CRKLSH3(1) domain should be similarly affected by the HACBPs used in this study whereas Bcr-Abl mutant proteins with deleted P-x-x-P-x-K motifs will only abolish direct interactions.

In principle, ternary complexes could also occur via the CRKL SH2 domain since the hyperactive Bcr-Abl tyrosine kinase phosphorylates many proteins in CML cells, including several large multisite docking proteins (paxillin, c-Cbl, p130Cas-family proteins, etc. (reviewed in ref 6 ), that contain several CRKL SH2 domain binding sites when massively tyrosine phosphorylated.

Since the CRKL–Bcr-Abl complexes are strongly decreased by the CRKLSH3(1) blocker peptides, our data argue against a prominent role of the CRKL SH2 domain in mediating CRKL–Bcr–Abl complexes.

The effects seen in cultured cell lines and freshly isolated patient CML blasts are just a first, if promising, step in testing the idea of a protein interaction blocker-based CML therapy. An obvious next step is to use animal models for CML—for example, NOD/SCID mice with xenografted human CML blast cells (18 19 20 21 22 and references therein) or recently established mouse models created by infection of mouse bone marrow with retroviruses or other approaches (23 24 25 and references there)—for further tests. One critical aspect that needs to be addressed in this context is the peptide stability in vivo. From various experiments (not shown here), we know that serum proteases are a major factor in the degradation of Antp-coupled HACBPs in cultured cells and that the Antennapedia portion of the disulfide-bonded Antp-HACBPs is strongly affected. Fortunately, the analysis of proteolytic cleavage sites by mass spectrometry is well established. Hence, it should be possible to find out which residues are critical. The Antennapedia shuttle peptide can be mutated in many positions without losing its biological activity (11) . This may result in novel shuttle sequences with better stability. Other shuttle sequences can also be tested. To our surprise, in initial experiments, an all D-amino acid Antp sequence that is known to be functional (11) was quite rapidly degraded in serum (unpublished data).

From comparing inhibitor concentrations required to down-regulate other signal transduction pathways in cultured cells vs. animal models, we expect that the biological activity of the HACBPs still needs to be improved 20- to 50-fold in order to accomplish major effects in animal models with peptide concentrations below 100 µM. Besides an improved stability, an increased CRKLSH3(1) binding affinity under retention of the great selectivity is therefore highly desirable. Recent in vitro studies suggest that major increases in binding affinity can be accomplished by using non-natural derivatives of amino acids (26) or consolidated ligands that will interact with more than one Src homology domain (27) .

Besides a detailed analysis of downstream targets of the Bcr-Abl–CRKL complex, a major future goal is thus the generation of peptides and structural analogs with picomolar affinities and greatly improved stability.

What are the advantages of selecting CRKL rather than other signaling proteins—for example, Grb2—as a protein interaction blocker target for CML? Grb2 is obviously a prominent contributor to Ras activation that subsequently leads to MAP kinase (Erk) activation and, finally, to cell proliferation. As a component of the central mitogenic signaling cascade, it is expected to inhibit the proliferation of nearly all cells. Experiments performed by us (unpublished data) and others (28 , 29) indeed show that Grb2 blocker peptides inhibit the proliferation of many cell types. It is therefore at least questionable whether Grb2-blocking molecules will be very useful as clinical therapeutics, unless they are used in combination with other more selective drugs. By contrast, Crk and CRKL have not yet been shown to play a crucial role in normal cell proliferation. The highly specific Crk/CRKL SH3(1) domain blocker peptides may therefore preferentially affect tumor cells where CRKL has acquired a proliferation-regulating function.

An interesting strategy to improve the effectiveness of drugs and to reduce undesired side effects by using short targeting peptides was recently reported by the Ruoslahti group (30 31 32 33 34) . These peptides are selected by phage display in animals to find sequences that preferentially bind in a specific organ or to a specific cell type. By coupling such a sequence to a chemotherapeutic compound, its biological activity can be significantly increased (34) . Such a strategy could also be useful in order to enhance the binding of HACBPs to blast cells and to reduce the amount of peptide lost in erythrocytes, endothelial cells, etc.

Beyond Bcr-Abl-induced signaling, other potential therapeutic targets for Crk/CRKLSH3(1) blockers are currently surfacing. c-Crk binds to a mutated form of the Ret receptor tyrosine kinase involved in certain cancers (multiple endocrine neoplasia type 2B; 35 ). Work from our laboratory indicates that bombesin, an autocrine growth factor produced by small cell lung cancer cells, also depends on Crk/CRKL for signal transmission in certain cell types (unpublished results). Additional therapeutic targets for CRKLSH3(1) specific inhibitors may surface as our knowledge of the molecular signaling cascades involving Crk family adapters increases.


   ACKNOWLEDGMENTS
 
We are grateful to Alain Prochiantz for helpful information on the use of Antennapedia peptides. Support from the Wilhelm-Sander-Stiftung, the Deutsche Forschungsgemeinschaft, and the Völsch-Stiftung is gratefully acknowledged.

Received for publication October 13, 1999. Revision received January 3, 2000.
   REFERENCES
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
 

  1. Verfaillie, C. M. (1998) Biology of chronic myelogenous leukemia. Hematol. Oncol. Clin. N. Am. 12,1-29
  2. Groffen, J., Heisterkamp, N. (1997) The chimeric BCR-ABL gene. Baillieres Clin. Haematol. 10,187-201
  3. Arlinghaus, R. B. (1998) The involvement of Bcr in leukemias with the Philadelphia chromosome. Crit. Rev. Oncog. 9,1-18
  4. Faderl, S., Talpaz, M., Estrov, Z., O’Brien, S., Kurzrock, R., Kantarjian, H. M. (1999) The biology of chronic myeloid leukemia. N. Engl. J. Med. 341,164-172
  5. Lugo, T. G., Pendergast, A. M., Muller, A. J., Witte, O. N. (1990) Tyrosine kinase activity and transformation potency of bcr-abl oncogene products. Science 247,1079-1082
  6. Feller, S. M., Posern, G., Voss, J., Kardinal, C., Sakkab, D., Zheng, J., Knudsen, B. S. (1998) Physiological signals and oncogenesis mediated through Crk family adapter proteins. J. Cell. Physiol. 177,535-552
  7. Knudsen, B. S., Zheng, J., Feller, S. M., Mayer, J. P., Burrell, S. K., Cowburn, D., Hanafusa, H. (1995) Affinity and specificity requirements for the first Src homology 3 domain of the Crk proteins. EMBO J 14,2191-2198
  8. Wu, X., Knudsen, B., Feller, S. M., Zheng, J., Sali, A., Cowburn, D., Hanafusa, H., Kuriyan, J. (1995) Structural basis for the specific interaction of lysine-containing proline-rich peptides with the N-terminal SH3 domain of c-Crk. Structure 3,215-226
  9. Posern, G., Zheng, J., Knudsen, B. S., Kardinal, C., Muller, K. B., Voss, J., Shishido, T., Cowburn, D., Cheng, G., Wang, B., Kruh, G. D., Burrell, S. K., Jacobson, C. A., Lenz, D. M., Zamborelli, T. J., Adermann, K., Hanafusa, H., Feller, S. M. (1998) Development of highly selective SH3 binding peptides for Crk and CRKL which disrupt Crk-complexes with DOCK180, SoS and C3G. Oncogene 16,1903-1912
  10. Schulz, A., Adermann, K., Eulitz, M., Feller, S. M., Kardinal, C. (2000) Preparation of disulfide-bonded heterodimers by titration of thioactivated peptides with thiol-containing peptides. Tetrahedron 56,3889-3891
  11. Clark, S. S., McLaughlin, J., Timmons, M., Pendergast, A. M., Ben-Neriah, Y., Dow, L. W., Crist, W., Rovera, G., Smith, S. D., Witte, O. N. (1988) Expression of a distinctive BCR-ABL oncogene in Ph1-positive acute lymphocytic leukemia (ALL). Science 239,775-777
  12. Derossi, D., Chassaing, G., Prochiantz, A. (1998) Trojan peptides: the penetration system for intracellular delivery. Trends Cell Biol 8,84-87
  13. Liu, K. Y., Timmons, S., Lin, Y. Z., Hawiger, J. (1996) Identification of a functionally important sequence in the cytoplasmic tail of integrin beta 3 by using cell-permeable peptide analogs. Proc. Natl. Acad. Sci. USA 93,11819-11824
  14. Vives, E., Brodin, P., Lebleu, B. (1997) A truncated HIV-1 Tat protein basic domain rapidly translocates through the plasma membrane and accumulates in the cell nucleus. J. Biol. Chem. 272,16010-16017
  15. Oehlke, J., Scheller, A., Wiesner, B., Krause, E., Beyermann, M., Klauschenz, E., Melzig, M., Bienert, M. (1998) Cellular uptake of an alpha-helical amphipathic model peptide with the potential to deliver polar compounds into the cell interior non-endocytically. Biochim. Biophys. Acta 1414,127-139
  16. Knudsen, B. S., Feller, S. M., Hanafusa, H. (1994) Four proline-rich sequences of the guanine-nucleotide exchange factor C3G bind with unique specificity to the first Src homology 3 domain of Crk. J. Biol. Chem. 269,32781-32787
  17. Senechal, K., Sawyers, C. L. (1996) Signal transduction-based strategies for the treatment of chronic myelogenous leukemia. Mol. Med. Today 2,503-509
  18. Kolibaba, K. S., Bhat, A., Heaney, C., Oda, T., Druker, B. J. (1999) CRKL binding to BCR-ABL and BCR-ABL transformation. Leuk. Lymphoma 33,119-126
  19. Skorski, T., Nieborowska Skorska, M., Calabretta, B. (1992) A model of Ph’ positive chronic myeloid leukemia-blast crisis cell line growth in immunodeficient SCID mice. Folia Histochem. Cytobiol. 30,91-96
  20. Wang, J. C., Lapidot, T., Cashman, J. D., Doedens, M., Addy, L., Sutherland, D. R., Nayar, R., Laraya, P., Minden, M., Keating, A., Eaves, A. C., Eaves, C. J., Dick, J. E. (1998) High level engraftment of NOD/SCID mice by primitive normal and leukemic hematopoietic cells from patients with chronic myeloid leukemia in chronic phase. Blood 91,2406-2414
  21. Hoyle, C., Bangs, C. D., Chang, P., Kamel, O., Mehta, B., Negrin, R. S. (1998) Expansion of Philadelphia chromosome-negative CD3(+)CD56(+) cytotoxic cells from chronic myeloid leukemia patients: in vitro and in vivo efficacy in severe combined immunodeficiency disease mice. Blood 92,3318-3327
  22. Skorski, T., Wlodarski, P., Daheron, L., Salomoni, P., Nieborowska Skorska, M., Majewski, M., Wasik, M., Calabretta, B. (1998) BCR/ABL-mediated leukemogenesis requires the activity of the small GTP-binding protein Rac. Proc. Natl. Acad. Sci. USA 95,11858-11862
  23. le Coutre, P., Mologni, L., Cleris, L., Marchesi, E., Buchdunger, E., Giardini, R., Formelli, F., Gambacorti Passerini, C. (1999) In vivo eradication of human BCR/ABL-positive leukemia cells with an ABL kinase inhibitor. J. Natl. Cancer Inst. 91,163-168
  24. Zhang, X., Ren, R. (1998) Bcr-Abl efficiently induces a myeloproliferative disease and production of excess interleukin-3 and granulocyte-macrophage colony-stimulating factor in mice: a novel model for chronic myelogenous leukemia. Blood 92,3829-3840
  25. Pear, W. S., Miller, J. P., Xu, L., Pui, J. C., Soffer, B., Quackenbush, R. C., Pendergast, A. M., Bronson, R., Aster, J. C., Scott, M. L., Baltimore, D. (1998) Efficient and rapid induction of a chronic myelogenous leukemia-like myeloproliferative disease in mice receiving P210 bcr/abl-transduced bone marrow. Blood 92,3780-3792
  26. Ghaffari, S., Daley, G. Q., Lodish, H. F. (1999) Growth factor independence and BCR/ABL transformation: promise and pitfalls of murine model systems and assays. Leukemia 13,1200-1206
  27. Nguyen, J. T., Turck, C. W., Cohen, F. E., Zuckermann, R. N., Lim, W. A. (1998) Exploiting the basis of proline recognition by SH3 and WW domains: design of N-substituted inhibitors. Science 282,2088-2092
  28. Xu, Q., Zheng, J., Xu, R., Barany, G., Cowburn, D. (1999) Flexibility of interdomain contacts revealed by topological isomers of bivalent consolidated ligands to the dual Src homology domain SH(32) of Abelson. Biochemistry 38,3491-3497
  29. Williams, E. J., Dunican, D. J., Green, P. J., Howell, F. V., Derossi, D., Walsh, F. S., Doherty, P. (1997) Selective inhibition of growth factor-stimulated mitogenesis by a cell-permeable Grb2-binding peptide. J. Biol. Chem. 272,22349-22354
  30. Cussac, D., Vidal, M., Leprince, C., Liu, W. Q., Cornille, F., Tiraboschi, G., Roques, B. P., Garbay, C. (1999) A Sos-derived peptidimer blocks the Ras signaling pathway by binding both Grb2 SH3 domains and displays antiproliferative activity. FASEB J 13,31-38
  31. Pasqualini, R., Koivunen, E., Ruoslahti, E. (1995) A peptide isolated from phage display libraries is a structural and functional mimic of an RGD-binding site on integrins. J. Cell Biol. 130,1189-1196
  32. Pasqualini, R., Ruoslahti, E. (1996) Organ targeting in vivo using phage display peptide libraries. Nature (London) 380,364-366
  33. Pasqualini, R., Koivunen, E., Ruoslahti, E. (1997) Alpha v integrins as receptors for tumor targeting by circulating ligands. Nat. Biotechnol. 15,542-546
  34. Arap, W., Pasqualini, R., Ruoslahti, E. (1998) Chemotherapy targeted to tumor vasculature. Curr. Opin. Oncol. 10,560-565
  35. Arap, W., Pasqualini, R., Ruoslahti, E. (1998) Cancer treatment by targeted drug delivery to tumor vasculature in a mouse model. Science 279,377-380
  36. Bocciardi, R., Mograbi, B., Pasini, B., Borrello, M. G., Pierotti, M. A., Bourget, I., Fischer, S., Romeo, G., Rossi, B. (1997) The multiple endocrine neoplasia type 2B point mutation switches the specificity of the Ret tyrosine kinase towards cellular substrates that are susceptible to interact with Crk and Nck. Oncogene 15,2257-2265



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