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(The FASEB Journal. 2000;14:1265-1278.)
© 2000 FASEB

Lysosome-related organelles

ESTEBAN C. DELL’ANGELICA, CHRIS MULLINS, STEVE CAPLAN and JUAN S. BONIFACINO1

Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892-5430, USA

1Correspondence: CBMB, NICHD, National Institutes of Health, Bldg. 18T Room 101, 18 Library Dr. MSC 5430, Bethesda, MD 20892-5430. USA. E-mail: juan{at}helix.nih.gov


   ABSTRACT
TOP
ABSTRACT
INTRODUCTION
CHARACTERISTICS OF LYSOSOME...
GENETIC DISORDERS OF LYSOSOME...
BIOGENESIS OF LYSOSOME-RELATED...
CONCLUDING REMARKS
REFERENCES
 
Lysosomes are membrane-bound cytoplasmic organelles involved in intracellular protein degradation. They contain an assortment of soluble acid-dependent hydrolases and a set of highly glycosylated integral membrane proteins. Most of the properties of lysosomes are shared with a group of cell type-specific compartments referred to as ‘lysosome-related organelles’, which include melanosomes, lytic granules, MHC class II compartments, platelet-dense granules, basophil granules, azurophil granules, and Drosophila pigment granules. In addition to lysosomal proteins, these organelles contain cell type-specific components that are responsible for their specialized functions. Abnormalities in both lysosomes and lysosome-related organelles have been observed in human genetic diseases such as the Chediak-Higashi and Hermansky-Pudlak syndromes, further demonstrating the close relationship between these organelles. Identification of genes mutated in these human diseases, as well as in mouse and Drosophila pigmentation mutants, is beginning to shed light on the molecular machinery involved in the biogenesis of lysosomes and lysosome-related organelles.—Dell’Angelica, E. C., Mullins, C., Caplan, S., Bonifacino, J. S. Lysosome-related organelles.


Key Words: melanosome • lytic granule • MIIC • platelet-dense granule • basophil granule • azurophil granule • pigment granule • Chediak-Higashi syndrome • Griscelli syndrome • Hermansky-Pudlak syndrome • protein trafficking


   INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
CHARACTERISTICS OF LYSOSOME...
GENETIC DISORDERS OF LYSOSOME...
BIOGENESIS OF LYSOSOME-RELATED...
CONCLUDING REMARKS
REFERENCES
 
LYSOSOMES ARE MEMBRANE-BOUND cytoplasmic organelles that serve as a major degradative compartment in eukaryotic cells (1 2 3) . Both endogenous and exogenous macromolecules can be delivered to lysosomes through the biosynthetic and endocytic pathways, respectively. In addition, lysosomes can degrade proteins transported from the cytosol (4) . The degradative function of these organelles is carried out by more than 50 acid-dependent hydrolases (e.g., proteases, lipases, glycosidases) contained within its lumen (1) . The limiting membrane of the lysosome contains a set of highly glycosylated, lysosomal-associated membrane proteins (LAMPs) such as LAMP-1, LAMP-2, and CD63/LAMP-3, the functions of which are still unclear. Additional lysosomal membrane proteins mediate transport of ions, amino acids, and other solutes across the lysosomal membrane and contribute to the maintenance of an acidic luminal pH in the range of 4.6–5.0 (5) .

Lysosomes are morphologically heterogeneous, often resembling other organelles of the endocytic and secretory pathways. Therefore, they are currently distinguished from other organelles on the basis of an operational definition, which describes them as membrane-bound acidic organelles that contain mature acid-dependent hydrolases and LAMPs but lack mannose 6-phosphate receptors (MPRs) (2) . Most or all of these characteristics are shared with a group of cell type-specific organelles that includes melanosomes, lytic granules, major histocompatibility complex (MHC) class II compartments (MIICs), platelet-dense granules, basophil granules, and neutrophil azurophil granules (Table 1 ). These shared traits suggest that these specialized organelles may be biogenetically related to lysosomes, a relationship that has been further illuminated by recent studies on multiorganellar genetic disorders such as the Chediak-Higashi and Hermansky-Pudlak syndromes.


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Table 1. Characteristics of lysosomes and related organelles

In this study, we review the properties of lysosome-related organelles, genetic evidence that supports a common organellar lineage with lysosomes, and current ideas about their biogenesis.


   CHARACTERISTICS OF LYSOSOME-RELATED ORGANELLES
TOP
ABSTRACT
INTRODUCTION
CHARACTERISTICS OF LYSOSOME...
GENETIC DISORDERS OF LYSOSOME...
BIOGENESIS OF LYSOSOME-RELATED...
CONCLUDING REMARKS
REFERENCES
 
Melanosomes
Melanosomes (Fig. 1A ) are the site of synthesis and storage of a group of related pigments known as melanins. In mammals, these pigments are the primary determinant of skin and hair color, as well as a major source of protection from the harmful effects of ultraviolet radiation (8) . Melanosomes are generated within melanocytes and retinal pigment epithelial cells, which are specialized cells derived from the embryonic neural tube. Morphological studies have led to a classification of melanosomes into four maturation stages (I-IV), with stages I and IV representing the most immature and mature forms, respectively (8) . Mature melanosomes can either remain in the melanocyte or be transferred to skin keratinocytes by an as yet poorly understood mechanism (9) .



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Figure 1. Morphology of lysosome-related organelles. A) Electron micrograph of melanosomes in mouse retinal pigmented epithelial cells. Arrowhead points to an individual melanosome. n: nucleus. Bar, 1 µm. B) Electron micrograph of visual pigment granules in a longitudinal section of the Drosophila eye. Arrowhead points to an individual pigment granule. Bar, 1 µm. C) Cryo-immunogold electron microscopy of a lytic granule in a cytotoxic T cell double labeled for LAMP-1 (small gold particles) and granzyme B (large gold particles). Bar, 100 nm. D) Cryo-immunogold electron microscopy of a multilamellar (type 6) MIIC in a human B lymphoblast. The picture shows double labeling for LAMP-1 (small gold particles) and MHC class II (large gold particles). Bar, 100 nm. E) Whole-mount electron microscopy of a platelet showing electron-dense granules. Arrowhead points to an individual dense granule. Bar, 2 µm. Panels A, B, and E are courtesy of Lisa Hartnell, NICHD. Panels C and D are reproduced from refs 6 and 7 , respectively, with copyright permission from Rockefeller University Press.

Melanosomes share a number of features with lysosomes (Table 1) , including the presence of both soluble and transmembrane lysosomal proteins, an acidic luminal environment, accessibility to endocytic tracers, and the ability to fuse with phagosomes (8) . In addition, they contain several melanosome-specific transmembrane glycoproteins that are directly involved in melanin biosynthesis, namely, the enzymes tyrosinase (10) , tyrosinase-related protein 1 (TRP-1) (11) and tyrosinase-related protein 2 (TRP-2) (12) . Another melanosomal protein, the pmel17/silver gene product, probably contributes to the formation of an striated luminal matrix that is characteristic of melanosomes (13) . Finally, the products of the OCA1 and OCA2/pink-eyed dilution genes have also been localized to the melanosomal membrane (14 15 16) .

Lytic granules
The targeted secretion of macromolecules from specialized organelles known as lytic granules (Fig. 1C ) is a major mechanism by which cytotoxic T lymphocytes and natural killer cells destroy virus-infected or tumor cells. These electron-dense organelles maintain an acidic pH, are accessible to endocytic tracers, and contain both soluble and transmembrane lysosomal proteins (Table 1) (17) . In addition, they accumulate specific luminal proteins involved in cell lysis, namely, the pore-forming protein perforin and a group of serine proteases known as granzymes, which have caspase-like or trypsin-like specificities (e.g., granzymes A, B, H, and M). Specific transmembrane proteins of lytic granules include CTLA-4 and Fas ligand, which are modulators of the immune response (18 , 19) , and GMP-17, a multi-spanning membrane protein of unknown function (20) .

MIICs
Professional antigen-presenting cells (i.e., macrophages, dendritic epithelial cells, and B lymphoblasts) express surface MHC class II-peptide complexes, which enable activation of CD4+ helper T cells. Binding of peptides to MHC class II molecules is thought to occur in pleiomorphic organelles termed MIICs (Fig. 1D ). MIICs are accessible through both the endocytic pathway, which provides peptides derived from the degradation of internalized antigens, and the biosynthetic pathway, which provides the newly synthesized MHC class II molecules (21 , 22) . These organelles have several characteristics in common with conventional lysosomes (Table 1) , including the presence of both soluble and transmembrane lysosomal proteins and the absence of MPRs (23) . In addition to MHC class II molecules and lysosomal proteins, MIICs are enriched in HLA-DM (24) and HLA-DO (25) , two proteins that regulate association of antigen-derived peptides to the MHC class II molecules (26) . Dendritic-cell MIICs also transiently contain DC-LAMP, a LAMP-like glycoprotein of unknown function (27) .

Platelet dense granules
Blood platelets are anucleate bodies that are derived from bone marrow megakaryocytes and play a central role in hemostasis and thrombosis. They contain three main types of secretory granules: {alpha}-granules, dense granules, and lysosomes (28) . Dense granules (also called {delta}-granules or dense bodies) have a highly condensed core that consists of serotonin, calcium, ATP, ADP, and pyrophosphate and allows these granules to be readily detected by whole-mount electron microscopy (Fig. 1E ). Secretion of dense granules is a critical event in the formation of the hemostatic plug.

Although the lumen of platelet-dense granules is less acidic than conventional lysosomes and appears to be devoid of lysosomal hydrolases (Table 1) , there is growing evidence that these organelles belong to the lysosomal lineage. Indeed, the dense granule membrane is enriched in the lysosomal proteins CD63/LAMP-3 and LAMP-2 (29 , 30 ; but see also ref 31 ). Moreover, genetic disorders that affect the biogenesis of melanosomes and lysosomes also result in platelet-dense granule deficiency (Table 1) .

In addition to the LAMPs, the dense granule membrane contains a specific H+ pump (32) and a serotonin transporter (33) , both of which are involved in serotonin uptake. Other transmembrane proteins found in platelet-dense granules—P-selectin (29) , GPIb, and {alpha}IIb3 integrin (34) —are thought to act as receptors for adhesive proteins and mediate platelet aggregation (28) .

Basophil granules
Basophils, together with mast cells, act as the major cellular mediators of inflammation associated with allergic disease. These cells have secretory granules that contain various effectors of inflammation including histamine, serotonin, heparin, and the neutral proteases tryptase and chymase (35) . In addition, basophil granules contain lysosomal hydrolases (36 , 37) and lysosomal membrane proteins such as LAMP-1, LAMP-2, CD63/LAMP-3, and LIMP IV/5G10 antigen (38 39 40) . Activation of high-affinity receptors for immunoglobulin E or chemotactic receptors results in exocytic release of the contents of these granules (35) , leading to the exposure of lysosomal membrane proteins on the surface of the activated cells (38 39 40) . These surface-exposed lysosomal membrane proteins are rapidly internalized via clathrin-coated pits and partly recycled to secretory granules (38 , 39) .

Neutrophil azurophil granules
Neutrophils are phagocytic cells that circulate in peripheral blood and play a central role in defense against invading bacteria. They contain a number of secretory granules that are generally classified into azurophil, specific, and gelatinase granules (41) . Azurophil granules, also known as primary granules, contain microbicidal polypeptides such as myeloperoxidase, bactericidal permeability-increasing protein, defensins, and azurocidin (41) . These organelles have long been thought to represent the neutrophil lysosomes, as they are the major cellular reservoir of lysosomal acid-dependent hydrolases (42) . In addition, azurophil granules have been shown to contain the lysosomal membrane proteins CD63/LAMP-3 (43) and CD68 (44) and to be accessible to endocytosed fluid phase markers under conditions of cellular stimulation (45) . However, the idea that these granules are closely related to lysosomes has been challenged by recent studies demonstrating that azurophil granules are not enriched in LAMP-1 or LAMP-2 (46 , 47) . Still, azurophil granules are abnormal in patients with Chediak-Higashi syndrome (48) , a disorder that affects both lysosomes and lysosome-related organelles (Table 1) .

Drosophila pigment cell granules
In the fruit fly, Drosophila melanogaster, the eye consists of ~800 functional units termed ommatidia, with each ommatidium comprising a group of eight photoreceptor cells surrounded by a sheath of pigment cells (49) . Pigment cells provide optical isolation of each ommatidium and, similarly to mammalian melanocytes, store pigments in membrane-bound compartments (i.e., pigment granules; Fig. 1B ). The pigments accumulated in these granules are chemically unrelated to melanins and fall into two major classes: drosopterins (red) and ommochromes (brown). Little is known about the protein composition of pigment cell granules. Presumably, they contain the products of genes involved in either the uptake or processing of pigment precursors (e.g., white, purple, vermilion; ref 50 ). Evidence that Drosophila pigment granules are related to lysosomes has been largely obtained from genetic studies (discussed below).


   GENETIC DISORDERS OF LYSOSOME-RELATED ORGANELLES
TOP
ABSTRACT
INTRODUCTION
CHARACTERISTICS OF LYSOSOME...
GENETIC DISORDERS OF LYSOSOME...
BIOGENESIS OF LYSOSOME-RELATED...
CONCLUDING REMARKS
REFERENCES
 
Further evidence for a close relationship between lysosomes and the specialized organelles described above has arisen from the study of genetic melano-lysosomal disorders in mammals (Table 2 ) and of mutations that affect eye pigmentation in Drosophila. Among the first group are autosomal, recessive disorders that affect the biogenesis and/or function of lysosomes, melanosomes, and one or more of the remaining lysosome-related organelles. In humans, these disorders include the Chediak-Higashi and Hermansky-Pudlak syndromes. The following sections summarize the main characteristics of these disorders and recent advances in our understanding of their molecular bases. A subsequent section is devoted to Drosophila pigmentation genes of the so-called ‘granule group’ and their relationship to lysosomal protein transport.


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Table 2. Genes associated with disorders of lysosome-related organelles in human and mouse

Chediak-Higashi syndrome
In humans, Chediak-Higashi syndrome is characterized clinically by variable hypopigmentation of skin, hair and eyes, bleeding diathesis (due to platelet-dense granule deficiency), progressive neurological dysfunction, and severe immunological deficiency (9 , 51) . The immunological deficiency is observed in ~90% of the cases, is associated with neutropenia and defective natural killer cell function, and leads to an accelerated lymphoproliferative phase that is often fatal. The remaining ~10% of the cases have few or no infections, but slowly develop serious neurological symptoms such as mental deficiency, seizures, and tremor (51) .

A characteristic feature of Chediak-Higashi syndrome at the cellular level is the presence of giant lysosomes, melanosomes, MIICs, lytic granules, and azurophil granules (48 , 51 , 52) . Platelet-dense granules, on the other hand, are either absent or fewer in number in circulating blood platelets (53) . A gene associated with Chediak-Higashi syndrome in humans (CHS1) has been cloned and found to encode a novel ~430-kDa protein (54 , 55) . The murine ortholog of CHS1 is mutated in the beige mouse strain (54 , 56) , which has long been regarded as a model for the syndrome (Table 2) . The protein encoded by this gene, named LYST or Beige, has been detected in a wide variety of cell types and is localized to the cytosol (57) , although association with microtubules has also been reported (52) .

The biological function(s) of the LYST/Beige protein remains incompletely understood. The ‘giant-lysosome’ phenotype, also observed in beige mouse fibroblasts, could be reverted on expression of the wild-type LYST/Beige protein in these cells (57) . Notably, overexpression of LYST/Beige in normal fibroblasts resulted in abnormally small lysosomes (57) . Together, these results argue for a role of this protein in fusion/fission events that determine the size of lysosomes and related organelles. Another study has shown abnormal trafficking of lysosomal/MIIC membrane proteins in B-lymphoblasts derived from patients with Chediak-Higashi syndrome, thus leading to the proposal that LYST/Beige functions in protein transport to late endosomal compartments (52) . As both sets of observations may reflect different aspects of LYST/Beige function, it is clear that further experiments will be required to elucidate its role in organelle biogenesis.

Griscelli syndrome and related disorders
At least three additional recessive disorders resembling Chediak-Higashi syndrome have been described in humans: Griscelli syndrome (58) , neuroectodermal melanolysosomal disease (59) , and partial albinism and immunodeficiency (PAID) syndrome (60) . All three disorders involve hypopigmentation of the skin and silvery gray hair, presumably due to impaired transfer of melanosomes from melanocytes to keratinocytes. On the other hand, none of these disorders is associated with a deficiency in platelet-dense granules. Griscelli and PAID syndromes also exhibit cellular immunodeficiency. In Griscelli syndrome, the immunodeficiency is likely to result, at least in part, from a dysfunction of secretory lysosomes (e.g., lytic granules) and can lead to an accelerated lymphoproliferative phase similar to that observed in Chediak-Higashi syndrome (51) . Patients with PAID syndrome or neuroectodermal melanolysosomal disease, but not with Griscelli syndrome, also display progressive dysfunction of the central nervous system. Abnormal organelle morphology has only been reported for neuroectodermal melanolysosomal disease (59) .

Although these three disorders have been described as distinct clinical entities, circumstantial evidence suggests that they may be allelic. A common candidate gene is MYO5A, which encodes a nonconventional myosin (myosin Va) and is the ortholog of the gene associated with the dilute mutation in mouse (Table 2) (61) . Dilute mutant mice exhibit hypopigmentation due to impaired accumulation of mature melanosomes at the dendritic tips of melanocytes (from where the melanosomes are transferred to keratinocytes), thus suggesting a role for myosin Va in intracellular melanosome translocation (62) . Mutations in MYO5A have been detected in a human patient suffering from Griscelli syndrome, as well as in a patient with symptoms that could correspond to Griscelli syndrome, neuroectodermal melanolysosomal disease, or PAID syndrome (63 , but see also ref 64 ).

Hermansky-Pudlak syndrome
Hermansky-Pudlak syndrome (65) is an autosomal, recessive disorder characterized by oculocutaneous albinism and prolonged bleeding, due to abnormal melanosomes and apparent absence of dense granules from blood platelets, respectively. In addition, patients suffering from this syndrome display progressive accumulation of partially degraded proteolipids in lysosomes (i.e., ceroid lipofuscinosis), which can eventually lead to death due to complications such as restrictive pulmonary fibrosis (66) . Hermansky-Pudlak syndrome thus may arise from mutations that affect the biogenesis and/or function of lysosomes and at least two lysosome-related organelles, namely, melanosomes and platelet-dense granules (Table 1) . The mutations that cause Hermansky-Pudlak syndrome have only recently begun to be identified. It is now clear that there are different variants of the disorder that are associated with distinct gene loci. Described below are the variants for which the affected genes have been identified and characterized.

Hermansky-Pudlak syndrome type 1
The gene responsible for this form of the disease, HPS1, was identified by positional cloning and found to encode a ubiquitously expressed protein with no homology to any known protein (67) . The murine ortholog of HPS1 was subsequently found to be mutated in the pale ear mutant mouse (68 , 69) , which is a model for the disease (Table 2) . Recent biochemical analyses have established that HPS1p is a ~79 kDa cytosolic protein capable of associating peripherally with membranes (70 , 71) .

While giant lysosomes and melanosomes are considered a cellular hallmark for Chediak-Higashi syndrome, enlarged melanosomes have also been described for pale ear melanocytes (68) . It is not clear, however, whether the same holds true for HPS1p-deficient melanocytes derived from patients with Hermansky-Pudlak syndrome type 1 (72) . Another interesting observation is that ammonia-induced secretion of lysosomal hydrolases is defective in pale ear fibroblasts (73) . Although the exact biological function of HPS1p remains elusive, all of the observations described above suggest that it plays a role in the biogenesis of both lysosomes and lysosome-related organelles.

Hermansky-Pudlak syndrome type 2
Soon after the identification of HPS1, it became apparent that a subset of patients with Hermansky-Pudlak syndrome do not bear mutations on this gene (74 , 75) . Using a candidate gene approach, a second gene associated with this disorder was identified (76) . The gene, referred to as ADTB3A, encodes the ß3A subunit of the heterotetrameric protein complex AP-3, which belongs to a family of adaptor protein (AP) complexes involved in protein trafficking (77 , 78) . The murine ortholog of ADTB3A was found to be mutated in the pearl mouse strain (Table 2) , which displays a phenotype similar to Hermansky-Pudlak syndrome (79) . A yeast counterpart for AP-3 has been identified and implicated in protein transport to the vacuole (i.e., to the yeast equivalent of the mammalian lysosome) (80 , 81) . Mammalian AP-3 has been shown to interact in vitro with the vesicle-forming protein clathrin (82) and with both tyrosine-based (83 , 84) and dileucine-based sorting signals (85) . Consistent with a role for AP-3 in protein trafficking, AP-3-deficient cells displayed abnormally enhanced trafficking of lysosomal membrane proteins through the plasma membrane (70 , 76 , 86) . Therefore, AP-3 may mediate the trafficking of a subset of integral membrane proteins from an intracellular site to lysosomes and, presumably, to melanosomes and platelet-dense granules. However, not all integral membrane proteins use AP-3 for targeting to lysosome-related organelles, as suggested by the apparently normal trafficking of MHC class II molecules and the associated invariant chain to MHCs in AP-3-deficient cells (87) .

Additional mouse models of Hermansky-Pudlak syndrome
At least 14 different murine gene loci have been associated with phenotypes related to Hermansky-Pudlak syndrome. As mentioned above, two of them, responsible for the pale ear and pearl mutations, represent the murine counterparts of HPS1 and ADTB3A, respectively (Table 2) . Another locus, responsible for the mocha mutation, encodes the {delta} subunit of murine AP-3 (88) . Consistent with the trafficking phenotype reported for AP-3 ß3A-mutant cells, mocha fibroblasts exhibit increased trafficking of lysosomal membrane proteins via the cell surface (70) . In addition to the melanosome and platelet-dense granule defects, mocha mice display neurological abnormalities such as hyperactivity and seizures.

Another recently identified gene is mutated in the pallid mouse strain (89) . This gene encodes a soluble ~25-kDa protein, named pallidin, which exhibits no significant homology to any previously characterized protein (note that this recently described pallidin protein is distinct from pallidin/protein 4.2, the product of a previous candidate gene; ref 90 ). Like the mocha mice, pallid mice display a marked neurological phenotype in addition to the pigmentation and platelet-dense granule defects. A possible role for pallidin in vesicle trafficking has been suggested on the basis of its interaction with syntaxin 13 (89) , a known component of the machinery that mediates membrane fusion (91) .

Finally, the gunmetal mouse strain has recently been shown to carry a mutation in the {alpha} subunit of Rab geranylgeranyl transferase, an enzyme that adds prenyl groups to the carboxyl termini of Rab GTPases (92) . The mutation results in decreased prenylation and membrane association of Rab27a (92) . Since Rabs are involved in protein trafficking (93) , decreased association of Rab27a or other Rabs with membranes could result in impaired transport of proteins to lysosome-related organelles.

Mutations in Drosophila pigment granule genes
Over 80 mutations affecting Drosophila eye color have been described and classified into four major groups: 1) those affecting the biosynthesis of drosopterin pigments, 2) those affecting the biosynthesis of ommochrome pigments, 3) those associated with ABC transporters involved in transport of pigment precursors, and 4) those affecting genes of the so-called ‘granule group’ (50) . The latter group of mutations causes a reduction in both types of Drosophila pigments, as well as additional phenotypes not restricted to eye color. Strikingly, the recent identification of seven granule group genes has revealed a close relationship to genes involved in vacuolar trafficking in the yeast, Saccharomyces cerevisiae (Table 3 ), and lysosomal trafficking in other organisms.


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Table 3. Genes associated with pigment granule biogenesis in Drosophila and their homology to yeast genes involved in trafficking to the vacuole

Before AP-3 subunit mutations were identified in mammals, the Drosophila garnet gene was found to encode the {delta} subunit of AP-3 (94 , 95) . Subsequently, additional genes of the granule group, namely, ruby, carmine, and orange, were found to encode the remaining ß3, µ3, and {varsigma}3 subunits of AP-3, respectively (96 , 96a) . As discussed above, both the mammalian and yeast AP-3 complexes mediate trafficking of integral membrane proteins to lysosomal organelles. As Drosophila AP-3 is also likely to be involved in lysosomal transport, the pigmentation phenotype of AP-3 mutants supports the idea that, like mammalian melanosomes, Drosophila pigment granules are related to lysosomes.

In addition to the genes encoding AP-3 subunits, three other genes of the granule group encode Drosophila homologs of yeast vacuolar protein sorting (VPS) gene products (Table 3) . The product of the Drosophila light gene (97) is an ortholog of yeast Vps41p, which has recently been shown to interact with the {delta} subunit of AP-3 and to be required for the formation of AP-3-coated carrier vesicles (98) . In addition, the products of the Drosophila deep orange and carnation genes are highly similar to yeast Vps18p and Vps33p, respectively (99 , 100) . In yeast, Vps18p and Vps33p associate into a multisubunit protein complex that also contains Vps11p and Vps16p (101) . Mutations in any of these subunits results in accumulation of prevacuolar multivesicular bodies and impaired transport to the vacuole from both the biosynthetic and endocytic pathways (101) . Similarly, Sevrioukov et al. (100) have shown that the products of deep orange and carnation are associated into a large complex, and that mutations in deep orange result in accumulation of multivesicular bodies and defective trafficking of an internalized ligand to lysosomes. Therefore, the pathways for protein trafficking to the vacuole in yeast, and to lysosomes and pigment granules in Drosophila, appear to be highly conserved.


   BIOGENESIS OF LYSOSOME-RELATED ORGANELLES
TOP
ABSTRACT
INTRODUCTION
CHARACTERISTICS OF LYSOSOME...
GENETIC DISORDERS OF LYSOSOME...
BIOGENESIS OF LYSOSOME-RELATED...
CONCLUDING REMARKS
REFERENCES
 
The study of the genetic disorders described in the previous sections has not only provided additional evidence for the relationship of lysosomes and lysosome-related organelles but also identified a number of putative components of the machinery involved in their biogenesis. Although the roles of these components are poorly understood, a tentative classification can be proposed on the basis of their similarity to other proteins and the phenotypes of the mutant organisms or cells. Thus, these components appear to be directly or indirectly involved in 1) formation of vesicular transport intermediates and sorting of cargo molecules (e.g., AP-3 complex and light/VPS41 gene product), 2) vesicle targeting or fusion events (e.g., deep orange/VPS18 and carnation/VPS33 gene products, pallidin, Rab geranylgeranyl transferase), 3) vesicle fission (e.g., LYST/Beige), 4) organelle movement (myosin Va), and 5) unknown processes (e.g., HPS1p). Exactly how these proteins participate in the biogenesis of lysosome-related organelles is currently unclear. However, the realization that the biogenesis of lysosome-related organelles is tightly linked to that of lysosomes provides a framework for a discussion of some of the elements involved.

Do lysosomes and lysosome-related organelles coexist in the same cell?
Before attempting an explanation of how lysosome-related organelles are formed, it is pertinent to ask whether cells that contain lysosome-related organelles also contain a population of conventional lysosomes. This question is crucial to explain the biogenesis of lysosome-related organelles, since if lysosome-related organelles were nothing but the lysosomes of particular cell types, then no special sorting events would be needed to generate them. In such a scenario, lysosome-related organelles would acquire their special properties by expression of cell type-specific proteins that are targeted to the organelles by means of conventional lysosomal trafficking pathways. On the other hand, if a cell generated separate populations of lysosomes and lysosome-related organelles, then sorting mechanisms should exist to ensure differential targeting of their corresponding resident proteins.

The answer to this question appears to vary depending on the cell type and the corresponding lysosome-related organelle. In cytotoxic T lymphocytes and natural killer cells, for example, lytic granules have been shown to constitute the vast majority of lysosomal organelles (6 , 102) . In antigen-presenting cells, MIICs were originally described as compartments distinct from lysosomes (23 , 103 , 104) . However, recent morphological studies suggest that MIICs are either identical to lysosomes or correspond to a normal subpopulation of lysosomes referred to as ‘early lysosomes’ (7 , 105) . In contrast, platelets have distinct populations of platelet-dense granules and lysosomes (28) . Similarly, melanocyte- or melanoma-derived cell lines appear to have overlapping but distinct populations of melanosomes and lysosomes (106 , 107) . A similar situation occurs in a basophilic cell line, in which histamine-containing granules can be separated from a population of apparently conventional lysosomes (108) . These observations suggest that, although the pathways leading to the formation of lysosomes and lysosome-related organelles may be shared to a large extent, there must be a divergence in some cell types, such that the two types of organelle become partially or totally segregated.

Sorting of luminal proteins to lysosome-related organelles
Sorting of acid-dependent hydrolases to lysosomes is mediated by mannose 6-phosphate residues on the hydrolases that bind to either of two membrane-bound MPRs in the trans-Golgi network (TGN) (2) . The hydrolases are transported by the receptors to early endosomes (Fig. 2 , step 1) or late endosomes (Fig. 2 , steps 2 or 3), where they dissociate from the receptors. The hydrolases are subsequently delivered to lysosomes (Fig. 2 , step 4) whereas the MPRs are returned to the TGN for additional rounds of transport (Fig. 2 , step 5). This mechanism is also likely responsible for the targeting of acid-dependent hydrolases to lysosome-related organelles. Moreover, some cell-specific luminal components of lysosome-related organelles might be sorted by the same mechanism. Examples of this are the lytic granule-specific proteins granzyme A and granzyme B, which contain mannose 6-phosphate residues (109) . These residues appear to be important for sorting to lytic granules since cells from patients with I-cell disease, who fail to add mannose 6-phosphate residues, secrete large amounts of granzyme A and granzyme B into the extracellular medium (109) .



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Figure 2. Schematic representation of the pathways involved in the biogenesis of lysosomes and lysosome-related organelles. Abbreviations: TGN, trans-Golgi network; EE, early endosome; RE, recycling endosome; LE, late endosome; L, lysosome; LRO, lysosome-related organelle; PM, plasma membrane. Numbers denote specific transport steps that are discussed in the text. Solid arrows indicate transport steps that have been documented, whereas dashed arrows indicate hypothetical transport steps.

Other cell-specific luminal components are not modified with mannose 6-phosphate residues and must therefore be sorted by mechanisms that do not involve the MPRs. Conceivably, these proteins could bear other sorting signals. In this regard, it is worth mentioning that a fraction of lysosomal enzymes can be transported to lysosomes independently of the MPRs, which probably explains why some cell types in I-cell disease patients (e.g., lymphocytes) store a normal complement of lysosomal enzymes in lysosomes (110) . The nature of this alternative mechanism has not been elucidated. Another possible mechanism is sorting by aggregation in the TGN, which appears to be a major means for sorting of hormones, neuropeptides, and enzymes to nonlysosomal secretory organelles such as endocrine and exocrine granules (111) . For instance, the lytic granule protein, perforin, has been shown to form complexes with sulfated proteoglycans (112) , which have been implicated in sorting by aggregation of other secretory granule contents. This mechanism has also been proposed to account for the sorting of cell-specific proteins to azurophil granules (41) .

Sorting of integral membrane proteins to lysosome-related organelles
Two pathways for lysosomal targeting have been described (3) . The first pathway, referred to as ‘direct’, involves transport from the TGN to endosomes (Fig. 2 , steps 1 and 3, or step 2), followed by transport to lysosomes (Fig. 2 , step 4). The second pathway, referred to as ‘indirect’, entails transport from the TGN to the plasma membrane (Fig. 2 , step 6), from which the proteins are internalized into early endosomes (Fig. 2 , step 7) and successively delivered to late endosomes (Fig. 2 , step 3) and lysosomes (Fig. 2 , step 4). Different lysosomal membrane proteins may utilize each pathway to different extents. LAMP-1 and lysosomal acid phosphatase are examples of proteins believed to use preferentially the direct and indirect pathways, respectively.

It is now well established that targeting of most integral membrane proteins to lysosomes is mediated by signals contained within the cytosolic tails of the proteins (3 , 113 114 115) . Two types of lysosomal targeting signals have been well characterized (Table 4 ). The first type, referred to as ‘tyrosine-based signals’, conform to the motif YXX{phi} (Y is tyrosine, X is any amino acid, and {phi} is a bulky hydrophobic amino acid). The second type, referred to as ‘dileucine-based signals’, contain critical leucine-leucine or leucine-isoleucine pairs and often an acidic residue four or five positions upstream of the pair. These signals interact with different affinities with subunits of AP complexes, which mediate vesicle budding and cargo recruitment at different stages of lysosomal-targeting pathways (77 , 78 , 115) .


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Table 4. Sorting signals in integral membrane proteins from lysosomes and lysosome-related organelles

A growing body of data suggests that some membrane proteins targeted to lysosome-related organelles use signals and pathways similar to those described above for lysosomal integral membrane proteins. First, expression of these proteins in cells that contain lysosomes but not lysosome-related organelles (e.g., fibroblasts) almost always results in localization of the expressed proteins to late endosomes or lysosomes. This has been documented for the melanosomal proteins tyrosinase (116 , 117) and TRP-1 (118) , the MIIC protein HLA-DM (119) , and the lytic granule protein CTLA4 (18) . Second, the cytosolic tails of these proteins are sufficient to effect targeting to late endosomes and lysosomes (116 117 118 119) . Finally, some of these tails have sequence motifs resembling tyrosine-based or dileucine-based signals involved in lysosomal targeting (Table 4) . For instance, a typical tyrosine-based sorting signal is involved in targeting HLA-DM to late endosomes and lysosomes in fibroblasts and to MIICs in antigen-presenting cells (119 , 120) . Similarly, a dileucine-based signal in the cytosolic tail of the melanosomal protein TRP-1 has been shown to mediate targeting to the endosomal-lysosomal system (118) . A dileucine-based signal in the cytosolic tail of tyrosinase also contributes to its targeting to endosomes and lysosomes in nonpigmented cells (116 , 117) . Other melanosomal proteins such as TRP-2, Pmel17, and the P-protein likewise contain potential tyrosine-based and/or dileucine-based signals within their cytosolic tails (118) , although the importance of these signals for sorting has not yet been assessed.

Other evidence, however, suggests that melanosomal sorting signals are not identical to lysosomal targeting signals. For example, the dileucine-based signal of tyrosinase has been shown to compete with tyrosine-based signals and to induce enlargement of endosomal structures, unlike dileucine-based signals from lysosomal proteins, which do not elicit these effects (116) . In addition, TRP-1 and tyrosinase colocalize only partially with LAMP-1 in some melanoma cells (107) . These observations suggest that melanosomal membrane proteins might have additional sorting information directing transport to melanosomes. Indeed, the sequence similarities in the cytosolic tails of melanosomal membrane proteins extend beyond the canonical tyrosine- or dileucine-based signals (116 , 118) . Comparison of the cytosolic tails of tyrosinase, TRP-1, and TRP-2 from various animal species has revealed a similar arrangement of four segments comprising 1) basic residues, 2) a canonical tyrosine- or dileucine-based signal, 3) an acidic/spacer sequence, and 4) a sequence containing tyrosine and/or acidic residues (116) . Whether these additional segments harbor specific melanosomal sorting signals and how these putative signals might be recognized are issues that need to be investigated further. We should add that some cell-specific proteins could be transported to lysosome-related organelles by signals that do not conform to known consensus motifs, as is the case for P-selectin (121) .

On the basis of the observations described above, it is reasonable to hypothesize that many cell-specific membrane proteins are transported to lysosome-related organelles along lysosomal targeting pathways. Most are thought to follow the direct pathway. However, there is evidence that some of these proteins are expressed at the cell surface, where they can be internalized and delivered to late endosomes and lysosomes following the indirect pathway (116) . The indirect pathway could allow retrieval of membrane proteins that are exposed on the cell surface on exocytic release of the organelle contents (38 , 39 , 43) . At some stage of these lysosomal targeting pathways, though, some cell-specific membrane proteins may be diverted away from the path to lysosomes and directed to lysosome-related organelles.

Models for the biogenesis of lysosome-related organelles
Early models of the biogenesis of lysosome-related organelles postulated that precursors of some of these organelles budded directly from the TGN (Fig. 2 , step 10). This could be a major mechanism for the generation of organelle precursors containing proteins that are sorted by aggregation in the TGN (e.g., perforin, azurophil granule proteins). The budded vesicles could also carry lysosomal hydrolases and membrane proteins, as has been shown to occur for immature regulated secretory granules (122) . Coated vesicles shuttling between these precursors and other organelles could either remove or add proteins, thus contributing to the maturation of the precursors.

The relationship of lysosome-related organelles to lysosomes, however, suggests an alternative model in which the endosomal system plays a key role in their biogenesis. As discussed in the previous section, several proteins that reside in lysosome-related organelles have signals that allow them to traffic through either the direct (Fig. 2 , steps 1, 3, and 4, or steps 2 and 4) or indirect (Fig. 2 , steps 6, 7, 3, and 4) lysosomal targeting pathways. For lysosome-related organelles that represent the only lysosomal compartment in a particular cell type, as may be the case for lytic granules, late endosomes containing cell-specific proteins would simply mature into mixed lytic granule-lysosomal structures. For other lysosome-related organelles, on the other hand, specific proteins would need to be segregated from those of conventional lysosomes, presumably in a late endosomal compartment (Fig. 2 , step 8). This process could rely on specific sorting signals and recognition molecules, as described in the previous section. Alternatively, cell-specific proteins could modify the late endosomal environment in such a way that physical segregation would ensue. For example, melanin synthesis likely starts at a premelanosomal stage (8) . Since melanosomal proteins are known to interact with melanin to form insoluble aggregates (8) , it is conceivable that vesicle domains containing these aggregates could be segregated from a precursor compartment to generate more differentiated melanosomes. Such a segregation process could be mediated by a specific machinery involved in vesicle fission, of which the LYST/Beige protein might be a component (57) . It is also possible that this segregation would not occur from endosomes but from lysosomes (Fig. 2 , step 9).

The two basic models discussed above are not mutually exclusive as the mature organelles could arise from fusion of TGN-derived vesicles carrying proteins sorted by aggregation with endosomal/lysosomal structures carrying proteins sorted by specific signals.

Translocation of lysosome-related organelles and fusion with the plasma membrane
Concurrent with their maturation, some lysosome-related organelles must acquire specific machineries that allow them to move to their sites of action. Melanosomes, for example, undergo long-range movement from the juxtanuclear area to dendrites and dendritic tips of melanocytes. This movement is mediated by association of the melanosomes with microtubules (62) . Once in the cell periphery, melanosomes are ‘captured’ by interactions mediated by myosin Va and F-actin, which prevent them from returning to the cell body (62) . The melanosomes are then transferred to keratinocytes. It is currently unknown whether this process involves phagocytic engulfment of the melanocyte dendrites by keratinocytes or secretion into the extracellular space followed by uptake.

Maturation of other lysosome-related organelles must also involve acquisition of a specific machinery that allows them to fuse with the plasma membrane on stimulation of secretion (Fig. 2 , step 11). Such is the case for lytic granules, platelet-dense granules, and basophil granules, which has prompted their classification as ‘secretory lysosomes’ (102) . Even MIICs have been shown to undergo exocytic fusion with the plasma membrane, suggesting that this may be one pathway by which peptide-loaded MHC class II molecules are deployed at the cell surface (123) . By comparison, most conventional lysosomes appear to be unable to fuse with the plasma membrane, although a small population of them can be induced to exocytose their contents by treatment of cells with calcium ionophores (124) .


   CONCLUDING REMARKS
TOP
ABSTRACT
INTRODUCTION
CHARACTERISTICS OF LYSOSOME...
GENETIC DISORDERS OF LYSOSOME...
BIOGENESIS OF LYSOSOME-RELATED...
CONCLUDING REMARKS
REFERENCES
 
Morphological, biochemical, and genetic data have converged to suggest that melanosomes, lytic granules, MIICs, platelet-dense granules, basophil granules, azurophil granules, and Drosophila pigment granules constitute a distinct class of cytoplasmic organelles related to lysosomes. They differ from lysosomes in that they perform specific functions unrelated to degradation. They also differ from regulated endocrine and exocrine granules, which do not have lysosomal characteristics. Much progress is being made in the identification of proteins involved in the biogenesis of these organelles, primarily from genetic studies in Drosophila, mice, and humans, as well as from extrapolation of genetic studies in yeast. However, the molecular and cellular bases for their relationship to lysosomes and their diversity remain poorly understood. We expect that ongoing work on the genetics and cell biology of these organelles will soon provide a more accurate picture of their biogenesis, as well as a better understanding of the mechanisms that govern protein trafficking in the endosomal/lysosomal system.


   ACKNOWLEDGMENTS
 
We thank Lisa M. Hartnell for micrographs shown in Fig. 1 and Mickey Marks (University of Pennsylvania) for critical review of the manuscript. We apologize to those authors whose work we failed to cite due to space limitations or oversight. C. H. is supported by a National Research Council Associateship and S. C. by a fellowship from the Human Frontiers Science Program Organization.


   REFERENCES
TOP
ABSTRACT
INTRODUCTION
CHARACTERISTICS OF LYSOSOME...
GENETIC DISORDERS OF LYSOSOME...
BIOGENESIS OF LYSOSOME-RELATED...
CONCLUDING REMARKS
REFERENCES
 

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