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(The FASEB Journal. 1999;13:S209-S215.)
© 1999 FASEB

Imaging structured space-time patterns of Ca2+ signals: essential information for decisions in cell division

ROBERT B. SILVER1

Marine Biological Laboratory, Woods Hole, Massachusetts 02543, USA

1Correspondence: Marine Biological Laboratory, Woods Hole, MA 02543, USA. E-mail: rsilver{at}mbl.edu


   INTRODUCTION
TOP
INTRODUCTION
CALCIUM SIGNALS IN MITOSIS:...
ENDOMEMBRANE CONTROL OF CALCIUM...
WHAT IS THE SPATIAL...
OVER WHAT TEMPORAL AND...
IMPACTS OF QUANTITATIVE ANALYSIS...
REFERENCES
 
STRUCTUREAND FUNCTION are interwoven within the fabric of essential cellular processes. The history of cell biology, especially throughout the past half century, has relied on integrated morphological and biochemical characterizations of specific processes. Many pioneers, Keith Porter being especially notable, have demonstrated that structures revealed through light and electron microscopy provided both a physical and conceptual scaffold on which biochemical and biophysical processes are conducted—a biochemical and biophysical cytology. Consideration of structure, however, is often limited to consideration of spatial dimensions of multi-molecular physical assemblies whose actions are rapid with respect to developmental processes. In this vein we can ask, "Is there is space-time structure to the regulatory biochemistry and transductions of dynamical cellular processes?" If such a space-time structure exists, then knowledge of its scale and bounds will be essential in establishing an understanding of fundamental biological processes.

To better understand the dynamics of these processes and their facilitating scaffold, we need to consider cellular processes in one temporal dimension as well as two or more spatial dimensions (i.e., observations along one temporal and two spatial dimensions of an optical section of a cell). Extending this notion of space-time structure to cellular signaling, we can apply mathematical approaches to learn if there is information content in those signals. If the cellular chemistry and physics of dynamical cellular processes does exists as a nonrandom structure, and there is inherent, nonrandom space-time structure to signals of dynamical cellular processes, then we may discover that it can lead to a more detailed understanding of that, and other related, processes.


   CALCIUM SIGNALS IN MITOSIS: WHAT IS THE NATURE OF THE MESSAGE?
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INTRODUCTION
CALCIUM SIGNALS IN MITOSIS:...
ENDOMEMBRANE CONTROL OF CALCIUM...
WHAT IS THE SPATIAL...
OVER WHAT TEMPORAL AND...
IMPACTS OF QUANTITATIVE ANALYSIS...
REFERENCES
 
Calcium signals that control cell function present us with a conundrum. Calcium signals are used in a large proportion of regulatory pathways and are thus considered ubiquitous in cell biology, yet they are also selective or specific in the control exerted among myriad functions within a common cytoplasm. How this complex messaging is achieved through a single ion, calcium, remains unsolved. Considering cell signals in the light of Communication Theory (e.g., ref 27 ) teaches us that such signals acting in a system as complex as living cells must have information content well beyond one bit (i.e., ‘on’ and ‘off’, or ‘start’ and ‘stop’. Within this paradigm applicable, then, we should find affirmative answers and supporting quantitative evidence to the questions: Is there evidence for such structure, and thus information content, in a calcium signal? Are there discernable biochemical and structural bases for such space-time structures signals?

Among the fundamental cellular processes, a calcium signal precedes, and is required for, nuclear envelope breakdown (NEB) (1 2 3 4 5 6 7 8 9 10 11 12 13 14) . Across cell and tissue biology, an increasing body of evidence indicates that temporally patterned Ca2+ signals, whose durations range from milliseconds through tens of seconds, are essential for regulation of cell function (6 , 9 10 11 12 , 14 15 16 17 18 19 20 21 22 23) . Various mechanisms for calcium release, which rely on various agonists, have been described and modeled, including: wholesale release (12 , 16) , waves (17 , 22 , 24) , oscillations (6 , 12 , 16 , 17 , 20 , 24 25 26) , and fine-structured space-time patterns of very limited spatial and temporal scope (6 , 9 , 27 28 29 30 31) . Some calcium signals appear to involve diffusion of Ca2+ over relatively large distances, while others appear to remain localized to the site of release (8 , 9 , 14 , 24 , 28 , 31 , 32) .

Studies from this laboratory have shown that the pre-NEB Ca2+ signal occurs as structured, nonrandom space-time patterns of several thousand quantum emission domains (QEDs) that are generated, and act, within 1 µM of the site of calcium release within perinuclear microdomains (14 , 33 34 35 ; see Fig. 1 Based, in part, on our quantitative analyses we have hypothesized that the pre-NEB Ca2+ signals, which do not spread beyond their microdomain, are evoked by a mechanism using reduced leukotriene B4 (LtB4) as the agonist. Consistent with that hypothesis, phospholipase A2 (PLA2) and other enzymes needed to produce LtB4, should be present, and phospholipase C (PLC) should be absent from the calcium regulatory endomembranes of (prophase) mitotic apparatus (MA), while both should be present in whole cells; indeed, that is the case.



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Figure 1. A) A multispectral video image of 10 s of the pre-nuclear envelope breakdown calcium signal in a second cell cycle sand dollar (Echinaracnius parma) embryo. Note that the calcium-dependent aequorin luminescence signal is found around the centrally located nucleus. The cell on the left was injected with hcp-r-aequorin, the cell on the right was uninjected. Experimental conditions are described in refs 8 , 14 , and 34 . Bar = 20 µM. B) A transmission electron micrograph showing calcium regulatory endomembranes, derived from endoplasmic reticulum, associated with microtubules in the mitotic apparatus. Experiential conditions are described in ref 38 . Bar = 200 nm. C) A scanning electron micrograph of a prophase mitotic apparatus isolated from a first cell cycle sea urchin embryo, showing the nucleus flanked by the asters. Note the preponderance of discrete membrane vesicles in the asters. Experimental conditions are described in ref 38 . Bar = 5 µM. D) A sketch showing the proposed model for regulation of the prenuclear envelope breakdown calcium signal through controlled synthesis of leukotriene B4 (e.g., refs 46 , 47 , 56 ), including integration of the pentose phosphate pathway (e.g., ref 47 ), and regeneration of ATP through creatine kinase (e.g., ref 57 ).


   ENDOMEMBRANE CONTROL OF CALCIUM IN MITOTIC APPARATUS
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INTRODUCTION
CALCIUM SIGNALS IN MITOSIS:...
ENDOMEMBRANE CONTROL OF CALCIUM...
WHAT IS THE SPATIAL...
OVER WHAT TEMPORAL AND...
IMPACTS OF QUANTITATIVE ANALYSIS...
REFERENCES
 
An important empirical step the study of mitosis came with methods for isolating and characterizing the MA. The first successful isolation of MA was that of Mazia and Dan (36) and the later work of Kane (37) (reviewed in ref 38 ). Several workers, notably Harris, Paweletz, and Hepler, promoted the notion that calcium regulation through MA-associated endomembranes (e.g., endoplasmic reticulum amid spindle and astral microtubules); those studies were based on morphological and histochemical methods and were therefore limited to inference. Silver et al. provided the first direct demonstration of calcium regulation by endomembranes within the MA came with the isolation of native MA whose osmotically active endomembranes exhibited ATP-dependent calcium uptake activity (38) . Subsequent work from Silver’s lab showed that the MA-associated calcium pump, which shared epitopic homology with the calcium pump of smooth muscle, was required for mitosis (38 , 39) . Independently, Wolniak (40) and Silver (39 , 41) , using calcium-7-chlortetracycline and immunofluorescence labeling methods, showed that discrete (punctate) MA-associated endomembrane stores of calcium were associated with the spindle and astral fibers of plant and animal cells, respectively.

The essential relationship between a specifically timed calcium signal from endomembranes and NEB and subsequent DNA synthesis, and the interaction of that signal with a mitotic clock mechanism, was established by Silver (8 , 41) . Furthermore, several labs reported calcium transients arising in the vicinity of the nucleus using calcium reporters ranging from quin II (e.g., refs 40 , 42 ) to fura2 (e.g., refs 43 , 44 ) and aequorin (e.g., ref 14 ).

It was with aequorin that the discrete nature of the pre-NEB calcium signal was most evident; the pre-NEB calcium signal was found to occur within microdomains (Fig. 1A ) and that the signals had inherent and decipherable structure in space and time. The first notable point from these studies was that the calcium pump and ion channels involved in generating the calcium signals were juxtaposed with the structure whose assembly was controlled—a situation similar to the intimate spatial arrangement of the sarcoplasmic reticulum and the sarcomere revealed in part through the studies of, and discussed by, Franzini-Armstrong in this volume. The concept of calcium microdomains was also seen to occur at the synaptic preterminal, where calcium influx across plasma membrane ion channels triggers secretion of chemical neurotransmitter at multiple sites along a synapse (10 , 11 , 29 , 30 , 45) .


   WHAT IS THE SPATIAL NATURE OF REGULATION OF PRE-NEB CALCIUM SIGNALS?
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INTRODUCTION
CALCIUM SIGNALS IN MITOSIS:...
ENDOMEMBRANE CONTROL OF CALCIUM...
WHAT IS THE SPATIAL...
OVER WHAT TEMPORAL AND...
IMPACTS OF QUANTITATIVE ANALYSIS...
REFERENCES
 
Quantitative analysis of the space-time structure of the pre-NEB calcium signal revealed another interesting clue to the regulation of calcium signals and mitosis, namely that neither the calcium nor the agonist that evoked the calcium release from endomembranes did not spread over distances <1 µM. That analysis ruled out a freely diffusible agonist such as 1,4,5-inositol trisphosphate (IP3), which is typically found to be generated at the plasma membrane in response to a stimulus interacting with receptors at the cell surface—a condition well established to not be required for mitosis reviewed in refs 8 , 14 ).

Those analyses, viewed in light of the earlier studies of fine structure of the size and distribution of endomembranes in mitotic cells, and especially in the vicinity of the nucleus, it was proposed that the calcium signals were generated locally and acted locally in relation to the site of their release (8 , 14) . Furthermore, it was proposed that the enzymatic machinery, and probably substrate, that produces the pre-NEB calcium signal agonist were also present on those same endomembranes (14) .

Recent findings demonstrate that that proposal is the organization that provides an accurate window on the cell; LtB4 can serve as the agonist for pre-NEB calcium signals, and the enzymes needed to produce LtB4 are, in fact, present and enriched on the calcium regulatory endomembranes recruited into prophase MA (46 , 47) . Enzymological and immunoblot methods have shown that PLA2, 5-lipoxygenase, leukotriene A4 hydrolase, glutathione S-transferase, and glutathione reductase are all present on the calcium regulatory endomembrane subfractions of whole cells and prophase MA. Indeed, these enzymes are enriched within the prophase MA. That provides the enzymatic activities to produce LtB4 from endomembrane phospholipid, and thus evoke Ca2+ release and also a shunt mechanism—production of leukotriene C4 (LtC4) in the presence of adequate levels of reduced glutathione (GSH), thus preventing inopportune LtB4-mediated calcium release. In contrast, phospholipase C activity, needed to produce IP3, although present in whole cells, is absent from the prophase MA. [This scheme is consistent with and analogous to the compartmentalized arrangement of cytochromes on the inner mitochondrial membrane first seen as ‘globular structural units’ (48 49 50 51) , which were consistent with the chemi-osmotic theory of Mitchell (52 , 53) .]

In this paradigm (see ref 47 and Fig. 1D ), a localized presence of reduced glutathione (GSH) is required (e.g., through action of glutathione S-transferase), which catalyzes the reaction:

and glutathione reductase, which provides the GSH from oxidized glutathione (GSSG) through the reaction:

The principal source for NADPH in animal cells is the oxidative branch of the pentose phosphate pathway (PPP); in plant cells, NADPH is also produced by chloroplasts. In oxidative PPP, NADPH is produced through the action of glucose-6-phosphate dehydrogenase on glucose-6-phosphate in the reaction:

In a subsequent reaction step following action of lactonase on 6-phospho-glucono-gamma-lactone to yield 6-phosphogluconate, a second NADPH can be produced by the action of 6-phosphogluconate dehydrogenase:

In other studies, (46 , 47) we have established that glucose–phosphate dehydrogenase is present on the calcium regulatory endomembranes of prophase MA. Thus, the calcium regulatory endomembranes of the prophase MA have each of the enzymes needed to 1) evoke calcium signals through localized generation of leukotriene B4; 2) prevent precocious calcium release using a shunt of leukotriene A4 to leukotriene C4 by action of glutathione S-transferase with GSH; and, 3) produce NADPH, by way of glucose-6-phosphate dehydrogenase (and possibly 6-phosphogluconate dehydrogenase) proximal to glutathione reductase production of GSH.

This paradigm in which the enzymes necessary to generate a calcium signal whose agonist does not diffuse beyond 1 µM, in effect remaining localized to the site where calcium signals arise and act, has led to developing the following reaction scheme for the regulation of pre-NEB calcium signals through LtB4 (Fig. 1D ). In this scheme, based on components that we have established to be present as part of the calcium regulatory endomembranes, one can trace activities from initial formation of arachidonic acid by action of PLA2 to the switch at LtA4 to yield either LtC4 and no calcium release or, in the absence of available GSH, evocation of calcium release by LtB4, which then spontaneously oxidizes to an inactive form. This scheme is supported by a compartmentalized metabolic model under development by Wastney and Silver (Wastney and Silver, preliminary results) and is supported by recent work of Pearson, Ponce-Dawson, and Keizer (personal communication from J. E. Pearson), which finds through purely numerical means that calcium release events must be localized (i.e., near to the sites of calcium-stimulated action; e.g., within microdomains).


   OVER WHAT TEMPORAL AND SPATIAL SCALE ARE THE PRE-NEB CALCIUM SIGNALS LIKELY TO ACT?
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INTRODUCTION
CALCIUM SIGNALS IN MITOSIS:...
ENDOMEMBRANE CONTROL OF CALCIUM...
WHAT IS THE SPATIAL...
OVER WHAT TEMPORAL AND...
IMPACTS OF QUANTITATIVE ANALYSIS...
REFERENCES
 
Invoking the concept of microdomains provides us a means of setting useful bounds within which we can establish the scale for temporal and spatial regulation and effects of the signal. The unity event in these signals is the release of calcium [i.e., the agonist-induced flow of calcium through the endomembrane calcium channel, for example, 1 ms (e.g., refs 29 , 30 , 45 )]. As all of the events within the microdomain either lead to or from the calcium release event, all kinetic assessments must be performed with 1 ms as the incremental unit for temporal analysis (e.g., for reaction-diffusion systems analysis). Such analyses might even have to be conducted at times steps of 0.2–0.3 ms to account for Nyquist sampling considerations.

The evident colocalization of enzymes needed for generation of an agonist that evokes a calcium signal on the same membranes that are the source of calcium, and juxtaposed to the site of the calcium regulated process (e.g., NEB), is fully consistent with the concept of calcium microdomains, for example, as used in analysis of calcium signals at synaptic preterminals (11) . Morphological surveys of the calcium-regulatory vesicles in prophase through anaphase MA yields an average vesicle diameter of 0.2–0.25 µM and a mean distance between vesicle centers of 0.5 µM (e.g., ref 14 ; Fig. 1B ). Thus, the spatial scale for analysis of the mechanism for calcium release should be performed over that spatial scale (i.e., the gird size for quantitative analyses of the mechanism for regulation of calcium signals and of calcium regulated processes should then be bounded between the minimum of 0.2 and a maximum of 1 µM (based on the diffusion limit for the calcium signal or its agonist (14) . One other important point to consider is that microdomains within a given MA do not exhibit coherence in their calcium release activities (i.e., actions within one microdomain are not directly linked with activities in another microdomain). This is evident when comparing microdomain patterns from successive temporal intervals (e.g., fig. 8 of ref 14 ) and the discontinuous nature of disruption of the nuclear envelope at NEB.

Accretion of calcium regulatory endomembranes within asters provides another clue to the structure/function relationships required for these signals. In assembling the aster and the polarized microtubule arrays, vesicles are collected through saltatory movement into an ever-increasingly thick shell around the centrosome (e.g., refs 54 , 55 ; Fig. 1C ). Those vesicles create localized environments conducive to microtubule assembly and stability. If the metabolic reactions catalyzed by endomembrane components are entrainable, then coordinated activities can be achieved within a volume limited by the diffusion of reactants and the KD of the component enzymes and receptors for the various substrates and ligands; the reaction-diffusion limits for which would define the size of a given microdomain.

Thus, analyses of regulatory processes over excessively large increments of temporal or spatial scales are unnecessary coarse and will lead to inappropriate interpretations of mechanisms attendant to observed events. This can be seen in two examples: one on the temporal scale and the second illustrated on a spatial scale. Temporal integrations over time scales typically used for ratiometric fluorescence-based measurements of intracellular calcium concentrations yield artifactual ‘waves’ where no such propagations were observed or occurred (e.g., refs 14 , 33 34 35 ). By the same token, too coarse a spatial scale can obscure necessary detail and is a useful caution to heed in image processing (deconvolution and reconstruction). By the same token, overly fine grid scales are unnecessary and can actually lead to failure of quantitative analyses through comprehensive mathematical models.


   IMPACTS OF QUANTITATIVE ANALYSIS IN CELL BIOLOGY—LOOKING FORWARD
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INTRODUCTION
CALCIUM SIGNALS IN MITOSIS:...
ENDOMEMBRANE CONTROL OF CALCIUM...
WHAT IS THE SPATIAL...
OVER WHAT TEMPORAL AND...
IMPACTS OF QUANTITATIVE ANALYSIS...
REFERENCES
 
The biological sciences, and cell biology in particular, have undergone remarkable advancement over the past five decades. This growth has resulted from the use of ever-more sophisticated means of addressing fundamental biological questions with ever-increasing accuracy and precision across a broadening spectrum of questions. Indeed, our ability to develop an understanding on a quantitative foundation, and to more readily identify cross-cutting ideas, concepts, and mechanisms, places us at the horizon of what was imaginable only a decade ago. Two decades ago such developments were the dreams of only a few. That forward progress has had enormous impact on science and, consequently, on society.

As computers have become more readily usable and accessible (largely through the visionary efforts of the NSF and NIH), scientists have found new means of analyzing and understanding the data they obtain and revealing newly-appreciated relationships among data—accelerating our acquisition of knowledge and understanding. Quantitative analysis and allied computational methods are ‘the looking glass’ for the most complex questions we face today and, like the word processor, are becoming more widely used for an ever-increasing number of complex tasks. Some recent examples of advances in biology and medicine fostered through computational processing and quantitative analysis include: 1) new understandings of the mechanism of generation and propagation of chemical and electrical signals essential for cell and tissue function (e.g., cardiac muscle contraction and rhythmicity); 2) 3-dimensional reconstruction of cell and tissue structures from light and electron micrographs (e.g., work reported by Aebi, McIntosh, and Satir) and dynamical cell processes (e.g., work reported by Larabell, Lippincott-Schwartz, Salmon, and Silver) through the use of image processing and tomographic once reserved for airborne and satellite imaging and medical applications; and, 3) modeling of metabolism, including interactions among substrates and enzymes, sequences of reactions, and the impact of various pharmacological agents on those pathways.

In this scenario, 2.5-dimensional renderings (what are now colloquially called 3-dimensional reconstructions) are giving rise to true 3-dimensional reconstructions. Similarly, many existing issues will need to be readdressed, such as development and use of accurate deconvolution algorithms for microscopes and cells/tissues/specimens; it is simply no longer sufficient to erode image to get sharp lines that match preconceived notions. In addition to the computational methods, new forms of imaging using polarized light (circular, interference contrast) will find increasing importance.

If we take clues from our past, we can see a bright future for cell biology—especially with the advent of analysis, modeling, and simulations of cellular processes. Such modeling efforts, and the understanding and new knowledge they afford, will bring together the vastness of the interplay of morphology, cytology, biochemistry, and quantitative methods from mathematics, chemistry, and physics. As the problems become tractable, and computing resources in the 100 teraflop range and beyond become available to those with the actual need for such capabilities (such as through the DOE ASCI and Next Generation programs and new multiagency research initiatives being launched by NSF, NIH, and DOE) we will enter a new era in cell biology that draws together more of the fundamental principles into our analyses and understanding. With proper nurturing, it is likely that 50 years hence, at the time of the 100th anniversary of Porter’s publication of the first electron micrographs of a cell, we will see a new face for cell biology that embraces a norm of interdisciplinary collaborations among biologists, physicists, chemists, mathematicians, and engineers; the information, insights, and view across that horizon should be spectacular.


   ACKNOWLEDGMENTS
 
Thanks are extended to Drs. Shimomura (Marine Biological Laboratory), Kishi and Inouye for their gifts of the coelenterazine derivatives used to prepare the semisynthetic aequorin preparations used in this study, and Drs. Shinya Inoué, Rodolfo Llinás, Daniel Mazia, John E. Pearson, Howard Rasmussen, Raoul F. Reiser, Roger D. Sloboda, Mitsuyuki Sugimori, Meryl E. Wastney, Stephen M. Wolniak, and John F. Wootton for their support and helpful comments and discussions. The work described here was supported by grants from the Molecular and Cellular Biosciences Program of the National Science Foundation, and that support is gratefully acknowledged.


   REFERENCES
TOP
INTRODUCTION
CALCIUM SIGNALS IN MITOSIS:...
ENDOMEMBRANE CONTROL OF CALCIUM...
WHAT IS THE SPATIAL...
OVER WHAT TEMPORAL AND...
IMPACTS OF QUANTITATIVE ANALYSIS...
REFERENCES
 

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