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(The FASEB Journal. 2005;19:704-715.)
© 2005 FASEB

More than just strand breaks: the recognition of structural DNA discontinuities by DNA-dependent protein kinase catalytic subunit

Ramiro Dip and Hanspeter Naegeli1

Institute of Veterinary Pharmacology and Toxicology, University of Zürich, Zürich, Switzerland

1 Correspondence: Institute of Veterinary Pharmacology and Toxicology, University of Zürich, Winterthurerstrasse 260, CH-8057 Zürich, Switzerland. E-mail: naegelih{at}vetpharm.unizh.ch

The DNA-dependent protein kinase (DNA-PK) is a trimeric factor originally identified as an enzyme that becomes activated upon incubation with DNA. Genetic defects in either the catalytic subunit (DNA-PKCS) or the two Ku components of DNA-PK result in immunodeficiency, radiosensitivity, and premature aging. This combined phenotype is generally attributed to the requirement for DNA-PK in the repair of DNA double strand breaks during various biological processes. However, recent studies revealed that DNA-PKCS, a member of the growing family of phosphatidylinositol 3-kinases, participates in signal transduction cascades related to apoptotic cell death, telomere maintenance and other pathways of genome surveillance. These manifold functions of DNA-PKCS have been associated with an increasing number of protein interaction partners and phosphorylation targets. Here we review the DNA binding properties of DNA-PKCS and highlight its ability to interact with an astounding diversity of nucleic acid substrates. This survey indicates that the large catalytic subunit of DNA-PK functions as a sensor of not only broken DNA molecules, but of a wider spectrum of aberrant, unusual, or specialized structures that interrupt the standard double helical conformation of DNA.—Dip, R., Naegeli, H. More than just strand breaks: the recognition of structural DNA discontinuities by DNA-dependent protein kinase catalytic subunit.


Key Words: genome • double strand break • DNA synthesis • eukaryote • DNA-PK




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