FASEB J. Pierce now sold as Thermo Scientific
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Swamynathan, S. K.
Right arrow Articles by Guntaka, R. V.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Swamynathan, S. K.
Right arrow Articles by Guntaka, R. V.
(The FASEB Journal. 1998;12:515-522.)
© 1998 FASEB


REVIEW

Role of single-stranded DNA regions and Y-box proteins in transcriptional regulation of viral and cellular genes

S. K. Swamynathana, Ashok Nambiara, and Ramareddy V. Guntakaa,1

a Department of Molecular Microbiology and Immunology, University of Missouri-Columbia, School of Medicine, Columbia, Missouri 65212, USA

Single-stranded regions, known to be important for optimal rates of transcription, have been observed in the promoters of several cellular genes as well as in the promoters of many pathogenic viruses. Several host-encoded, single-stranded DNA binding proteins capable of binding these regions have been purified and their genes isolated. In this review, information available about single-stranded regions present within various promoters and the interaction of a novel class of single-stranded DNA binding transcription factors belonging to the Y-box family of proteins is reviewed. Mechanisms by which these proteins influence transcription of both cellular and viral genes are proposed.—Swamynathan, S. K., Nambiar, A., Guntaka, R. V. Role of single-stranded DNA regions and Y-box proteins in transcriptional regulation of viral and cellular genes. FASEB J. 12, 515–522 (1998)


Key Words: regulation of transcription • gene expression • S1-sensitive sites • supercoiled DNA • eukaryotic promoters




This article has been cited by other articles:


Home page
Biophys. JHome page
G. Witte, R. Fedorov, and U. Curth
Biophysical Analysis of Thermus aquaticus Single-Stranded DNA Binding Protein
Biophys. J., March 15, 2008; 94(6): 2269 - 2279.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
H. P. Morgan, P. Estibeiro, M. A. Wear, K. E.A. Max, U. Heinemann, L. Cubeddu, M. P. Gallagher, P. J. Sadler, and M. D. Walkinshaw
Sequence specificity of single-stranded DNA-binding proteins: a novel DNA microarray approach
Nucleic Acids Res., May 11, 2007; 35(10): e75 - e75.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
T. Uchiumi, A. Fotovati, T. Sasaguri, K. Shibahara, T. Shimada, T. Fukuda, T. Nakamura, H. Izumi, T. Tsuzuki, M. Kuwano, et al.
YB-1 Is Important for an Early Stage Embryonic Development: NEURAL TUBE FORMATION AND CELL PROLIFERATION
J. Biol. Chem., December 29, 2006; 281(52): 40440 - 40449.
[Abstract] [Full Text] [PDF]


Home page
Cancer Res.Home page
K. Mantwill, N. Kohler-Vargas, A. Bernshausen, A. Bieler, H. Lage, A. Kaszubiak, P. Surowiak, T. Dravits, U. Treiber, R. Hartung, et al.
Inhibition of the Multidrug-Resistant Phenotype by Targeting YB-1 with a Conditionally Oncolytic Adenovirus: Implications for Combinatorial Treatment Regimen with Chemotherapeutic Agents.
Cancer Res., July 15, 2006; 66(14): 7195 - 7202.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
S. Dooley, H. M. Said, A. M. Gressner, J. Floege, A. En-Nia, and P. R. Mertens
Y-box Protein-1 Is the Crucial Mediator of Antifibrotic Interferon-{gamma} Effects
J. Biol. Chem., January 20, 2006; 281(3): 1784 - 1795.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
J. I. Young, E. P. Hong, J. C. Castle, J. Crespo-Barreto, A. B. Bowman, M. F. Rose, D. Kang, R. Richman, J. M. Johnson, S. Berget, et al.
Inaugural Article: Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2
PNAS, December 6, 2005; 102(49): 17551 - 17558.
[Abstract] [Full Text] [PDF]


Home page
J. Am. Soc. Nephrol.Home page
C. R.C. van Roeyen, F. Eitner, S. Martinkus, S. R. Thieltges, T. Ostendorf, D. Bokemeyer, B. Luscher, J. M. Luscher-Firzlaff, J. Floege, and P. R. Mertens
Y-Box Protein 1 Mediates PDGF-B Effects in Mesangioproliferative Glomerular Disease
J. Am. Soc. Nephrol., October 1, 2005; 16(10): 2985 - 2996.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
O. V. Skabkina, D. N. Lyabin, M. A. Skabkin, and L. P. Ovchinnikov
YB-1 Autoregulates Translation of Its Own mRNA at or prior to the Step of 40S Ribosomal Subunit Joining
Mol. Cell. Biol., April 15, 2005; 25(8): 3317 - 3323.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
A. En-Nia, E. Yilmaz, U. Klinge, D. H. Lovett, I. Stefanidis, and P. R. Mertens
Transcription Factor YB-1 Mediates DNA Polymerase {alpha} Gene Expression
J. Biol. Chem., March 4, 2005; 280(9): 7702 - 7711.
[Abstract] [Full Text] [PDF]


Home page
J. Neurosci.Home page
E. Klenova, A. C. Scott, J. Roberts, S. Shamsuddin, E. A. Lovejoy, S. Bergmann, V. J. Bubb, H.-D. Royer, and J. P. Quinn
YB-1 and CTCF Differentially Regulate the 5-HTT Polymorphic Intron 2 Enhancer Which Predisposes to a Variety of Neurological Disorders
J. Neurosci., June 30, 2004; 24(26): 5966 - 5973.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
T. Fukuda, M. Ashizuka, T. Nakamura, K. Shibahara, K. Maeda, H. Izumi, K. Kohno, M. Kuwano, and T. Uchiumi
Characterization of the 5'-untranslated region of YB-1 mRNA and autoregulation of translation by YB-1 protein
Nucleic Acids Res., January 29, 2004; 32(2): 611 - 622.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
I. Gaudreault, D. Guay, and M. Lebel
YB-1 promotes strand separation in vitro of duplex DNA containing either mispaired bases or cisplatin modifications, exhibits endonucleolytic activities and binds several DNA repair proteins
Nucleic Acids Res., January 12, 2004; 32(1): 316 - 327.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
K. Jurchott, S. Bergmann, U. Stein, W. Walther, M. Janz, I. Manni, G. Piaggio, E. Fietze, M. Dietel, and H.-D. Royer
YB-1 as a Cell Cycle-regulated Transcription Factor Facilitating Cyclin A and Cyclin B1 Gene Expression
J. Biol. Chem., July 18, 2003; 278(30): 27988 - 27996.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
O. V. Skabkina, M. A. Skabkin, N. V. Popova, D. N. Lyabin, L. O. Penalva, and L. P. Ovchinnikov
Poly(A)-binding Protein Positively Affects YB-1 mRNA Translation through Specific Interaction with YB-1 mRNA
J. Biol. Chem., May 9, 2003; 278(20): 18191 - 18198.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
U. Raffetseder, B. Frye, T. Rauen, K. Jurchott, H.-D. Royer, P. L. Jansen, and P. R. Mertens
Splicing Factor SRp30c Interaction with Y-box Protein-1 Confers Nuclear YB-1 Shuttling and Alternative Splice Site Selection
J. Biol. Chem., May 9, 2003; 278(20): 18241 - 18248.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Sci.Home page
T. Soop, D. Nashchekin, J. Zhao, X. Sun, A. T. Alzhanova-Ericsson, B. Bjorkroth, L. Ovchinnikov, and B. Daneholt
A p50-like Y-box protein with a putative translational role becomes associated with pre-mRNA concomitant with transcription
J. Cell Sci., April 15, 2003; 116(8): 1493 - 1503.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
E. M. Anderson, W. A. Halsey, and D. S. Wuttke
Delineation of the high-affinity single-stranded telomeric DNA-binding domain of Saccharomyces cerevisiae Cdc13
Nucleic Acids Res., October 1, 2002; 30(19): 4305 - 4313.
[Abstract] [Full Text] [PDF]


Home page
Biol. Reprod.Home page
J. Yu, N. B. Hecht, and R. M. Schultz
RNA-Binding Properties and Translation Repression In Vitro by Germ Cell-Specific MSY2 Protein
Biol Reprod, October 1, 2002; 67(4): 1093 - 1098.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. Biol.Home page
M. Ashizuka, T. Fukuda, T. Nakamura, K. Shirasuna, K. Iwai, H. Izumi, K. Kohno, M. Kuwano, and T. Uchiumi
Novel Translational Control through an Iron-Responsive Element by Interaction of Multifunctional Protein YB-1 and IRP2
Mol. Cell. Biol., September 15, 2002; 22(18): 6375 - 6383.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
P. S. Holm, S. Bergmann, K. Jurchott, H. Lage, K. Brand, A. Ladhoff, K. Mantwill, D. T. Curiel, M. Dobbelstein, M. Dietel, et al.
YB-1 Relocates to the Nucleus in Adenovirus-infected Cells and Facilitates Viral Replication by Inducing E2 Gene Expression through the E2 Late Promoter
J. Biol. Chem., March 15, 2002; 277(12): 10427 - 10434.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
M. Shnyreva, D. S. Schullery, H. Suzuki, Y. Higaki, and K. Bomsztyk
Interaction of Two Multifunctional Proteins. HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K AND Y-BOX-BINDING PROTEIN
J. Biol. Chem., May 12, 2000; 275(20): 15498 - 15503.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
Z. Hu, S. Jin, and K. W. Scotto
Transcriptional Activation of the MDR1 Gene by UV Irradiation. ROLE OF NF-Y AND Sp1
J. Biol. Chem., January 28, 2000; 275(4): 2979 - 2985.
[Abstract] [Full Text] [PDF]


Home page
J. Cell Sci.Home page
P. Ruzanov, V. Evdokimova, N. Korneeva, J. Hershey, and L. Ovchinnikov
Interaction of the universal mRNA-binding protein, p50, with actin: a possible link between mRNA and microfilaments
J. Cell Sci., January 10, 1999; 112(20): 3487 - 3496.
[Abstract] [PDF]


Home page
J. Biol. Chem.Home page
I. V. Chernukhin, S. Shamsuddin, A. F. Robinson, A. F. Carne, A. Paul, A. I. El-Kady, V. V. Lobanenkov, and E. M. Klenova
Physical and Functional Interaction between Two Pluripotent Proteins, the Y-box DNA/RNA-binding Factor, YB-1, and the Multivalent Zinc Finger Factor, CTCF
J. Biol. Chem., September 15, 2000; 275(38): 29915 - 29921.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
C. F. Wright, B. W. Oswald, and S. Dellis
Vaccinia Virus Late Transcription Is Activated in Vitro by Cellular Heterogeneous Nuclear Ribonucleoproteins
J. Biol. Chem., October 26, 2001; 276(44): 40680 - 40686.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
J. T. Norman, G. E. Lindahl, K. Shakib, A. En-Nia, E. Yilmaz, and P. R. Mertens
The Y-box Binding Protein YB-1 Suppresses Collagen alpha 1(I) Gene Transcription via an Evolutionarily Conserved Regulatory Element in the Proximal Promoter
J. Biol. Chem., August 3, 2001; 276(32): 29880 - 29890.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
M. A. Skabkin, V. Evdokimova, A. A. M. Thomas, and L. P. Ovchinnikov
The Major Messenger Ribonucleoprotein Particle Protein p50 (YB-1) Promotes Nucleic Acid Strand Annealing
J. Biol. Chem., November 21, 2001; 276(48): 44841 - 44847.
[Abstract] [Full Text] [PDF]




HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Copyright © 1998 by The Federation of American Societies for Experimental Biology.